Hello biojava people, I am new to this list and also not very familiar with BioJava. I was trying to parse an EMBL File and extract the dna sequence with RichSequence.IOTools.readEMBLDNA(br, ns); .
For most of the embl files this isn't a problem, but the file with accssion number AL009126 (Bacillus subtilis 168) caused an BioExcpetion saying the sequence could not be read. Can somebody tell where the problem is or how it can be solved? I'm using BioJava 1.5. Thank you a lot Antje Here is the error message: Exception Has Occurred During Parsing. Please submit the details that follow to [EMAIL PROTECTED] or post a bug report to http://bugzilla.open-bio.org/ Format_object=org.biojavax.bio.seq.io.EMBLFormat Accession=AL009126 Id=not set Comments=Unable to handle contig assemblies just yet Parse_block= Stack trace follows .... at org.biojavax.bio.seq.io.EMBLFormat.readSection(EMBLFormat.java:730) at org.biojavax.bio.seq.io.EMBLFormat.readRichSequence(EMBLFormat.java:284) at org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) ... 2 more _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
