Biojava 1.6 has been released and is available from http://
biojava.org/wiki/BioJava:Download
Biojava 1.6 offers more functionality and stability over the previous
official releases. BioJava now depends on Java 1.5+. We highly
recommend you to upgrade as soon as possible.
In detail, the phylo package org.biojavax.bio.phylo was improved and
expanded by our GSOC'07 student Boh-Yun Lee. It now contains fully-
functional Nexus and Phylip parsers, and tools for calculating UPGMA
and Neighbour Joining, Jukes-Kantor and Kimura Two Parameter, and MP.
It uses JGraphT to represent parsed trees.
The PDB file parser was improved by Jules Jacobsen for better dealing
with PDB header records. Andreas Draeger provided several patches for
improving the Genetic Algorithm modules. Additionally this release
contains numerous bug fixes and documentation improvements.
Thanks to the entire biojava community for making this possible!
Happy Biojava-ing,
Andreas
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Andreas Prlic Wellcome Trust Sanger Institute
Hinxton, Cambridge CB10 1SA, UK
+44 (0) 1223 49 6891
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The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.
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