hi biojava-l,
i am getting the following exception: badly formatted line ... SEQRES 3 A 76 C C A G A OMC U OMG A A YG A PSU org.biojava.bio.structure.io.PDBParseException: amino acid name is not of length 3! (YG) when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It seems that YG [2] is an ordinary compound that is built into the RNA chain. is this really an error inside the PDB file, or is this something where the biojava parser confuses amino acids and hetero ids because of their lengths? is there an approved biojava way where i can catch the exception without breaking the rest of the parsing? many thanks, raphael [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
