To get this, you'll need to have loaded the NCBI taxonomy first, either into memory (a bit big) or via a BioSQL database (the better option).
cheers, Richard helpmedicine savelife wrote: > Hello Mark, > > I am using BioJava 1.6 and trying to parse a genbank file for the organism > and source tag information. > > I am able to get taxon ID, however, I am unable to use getNameHierarchy() or > get the common name of the organism. I looked at the documentation and > understood that they are ignored by the parser. Is there a way to get this? > > Thanks, > Medi > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: [EMAIL PROTECTED] http://www.eaglegenomics.com/ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
