Hi there at Biojava, I have an ontology file (from www.geneontology.org, gene_ontology.1_2.obo). A typical entry for a term is:
[Term] id: GO:0000025 name: maltose catabolic process namespace: biological_process def: "The chemical reactions and pathways resulting in the breakdown of the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose)." [GOC:jl, ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"] subset: gosubset_prok synonym: "malt sugar catabolic process" EXACT [] synonym: "malt sugar catabolism" EXACT [] synonym: "maltose breakdown" EXACT [] synonym: "maltose degradation" EXACT [] synonym: "maltose hydrolysis" NARROW [] xref: MetaCyc:MALTOSECAT-PWY is_a: GO:0000023 ! maltose metabolic process is_a: GO:0046352 ! disaccharide catabolic process I am reading this with the code suggested in: http://biojava.open-bio.org/wiki/BioJava:CookBook:OBO:parse I would like to get the is_a entries (as Term) - is this possible ? I tried to find this everywhere (annotations?) but find it (google searches included). Many Thanks JP _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
