Mara,
Or TreeViewJ <http://treeviewj.sourceforge.net/Site/TreeViewJ.html>
which handles PhyloXML, nwk and extended nwk. It also has a light
weight library that does some of the things found in PAL (found in
subversion source).
Marc
On Oct 30, 2009, at 12:00 PM, [email protected]
wrote:
Date: Fri, 30 Oct 2009 11:00:02 -0400
From: Hilmar Lapp <[email protected]>
Subject: Re: [Biojava-l] Newick Tree Visualization
To: Mara Axiom <[email protected]>
Cc: [email protected]
Message-ID: <[email protected]>
Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes
Mara - have you looked at PhyloWidget? (http://www.phylowidget.org)
-hilmar
On Oct 30, 2009, at 10:34 AM, Mara Axiom wrote:
Hello,
I'm new to BioJava. I have copied the code "*getTreeAsJGraphT
(Weighted
Tree)*" from http://biojava.org/wiki/BioJava:PhyloSOC07_doc which
basically
parses a Newick string, and displays the result in text using
JGraphT. It
works! My question is how to visualize the result in form of a
graphic tree,
not text? Is there any way to do this in BioJava? Is there any
source code
or example that can help me? Any help is appreciated.
I was looking at JGraph, but I'm not sure if it does what I want. If
it
does, I don't know where to start.
Mara
P.S. I know there are tools which do this, but I need to create my
own code
for something specific I want.
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