You don;t need to have Jmol in the classpath for running biojava, but if you do, you can use the jmol/biojava interface contained in the protein structure modules. In that case JmolApplet.jar would be sufficient, you don;t need to check out the Jmol source...
Andreas On Sat, Nov 7, 2009 at 10:33 AM, Andy Lu <[email protected]> wrote: > O I see, but don't I also need to have all of the JMol java files set up > first, or the BioJava jar file contains everything I need? > > > On Sat, Nov 7, 2009 at 1:14 PM, Andreas Prlic <[email protected]> wrote: > >> Hi Andy, >> >> best thing is to download the jar files from >> http://biojava.org/wiki/BioJava:Download . >> >> Proably the easiest way to get started is to create a new project in >> eclipse and right click on the project-> Properties -> Java build path -> >> Libraries -> Add jars >> >> Then your project will know how where to find the dependencies and you >> can start writing your own code. >> >> Andreas >> >> >> On Sat, Nov 7, 2009 at 10:06 AM, Andy Lu <[email protected]> wrote: >> >>> Hi, I am able to get JMol to run on Eclipse, but I am having a lot of >>> trouble getting biojava to run, I am not sure how to set up all of the >>> class >>> path, etc. >>> I am new to using Eclipse and biojava. Is there a specific step by step >>> instruction online available? >>> >>> Any help would be greatly appreciated! >>> _______________________________________________ >>> Biojava-l mailing list - [email protected] >>> http://lists.open-bio.org/mailman/listinfo/biojava-l >>> >> >> > > > -- > Andy Lu > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
