Hello. Could you also post the relevant parts of your code that you are running when this exception happens?
cheers, Richard On 11 Dec 2009, at 00:46, Ilhami Visne wrote: > Hi, > > I'm following the suggestion "Please submit the details that follow to > [email protected] or post a bug report to http://bugzilla.open-bio.org/"; > . > > The sequence of concerns is at > http://www.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=39645757&rettype=gb&seq_start=1353&seq_stop=2128&strand=1 > > Format_object=org.biojavax.bio.seq.io.GenbankFormat > Accession=null > Id=null > Comments=Bad section > Parse_block= > Stack trace follows .... > > > at > org.biojavax.bio.seq.io.GenbankFormat.readSection(GenbankFormat.java:603) > at > org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:278) > at > org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) > ... 8 more > Caused by: java.lang.NullPointerException > at > org.biojavax.bio.seq.io.GenbankFormat.readSection(GenbankFormat.java:593) > ... 10 more > org.biojava.bio.BioException: IO failure whilst reading from Genbank > > Any quick fix,patch? > > thanks. > Ilhami Visne > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l -- Richard Holland, BSc MBCS Operations and Delivery Director, Eagle Genomics Ltd T: +44 (0)1223 654481 ext 3 | E: [email protected] http://www.eaglegenomics.com/ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
