Hi Tiago, I used the tree "(A,B,(C,D)E)F;" comes from wikipedia and get the same error
http://en.wikipedia.org/wiki/Newick_format "the 3rd one" (,,(,)); *no nodes are named* (A,B,(C,D)); *leaf nodes are named* (A,B,(C,D)E)F; *all nodes are named* (:0.1,:0.2,(:0.3,:0.4):0.5); *all but root node have a distance to parent* (:0.1,:0.2,(:0.3,:0.4):0.5):0.0; *all have a distance to parent* (A:0.1,B:0.2,(C:0.3,D:0.4):0.5); *distances and leaf names* *(popular)* (A:0.1,B:0.2,(C:0.3,D:0.4)E:0.5)F; *distances and all names* ((B:0.2,(C:0.3,D:0.4)E:0.5)F:0.1)A; *a tree rooted on a leaf node* *(rare)* 2009/12/15 Tiago Antão <[email protected]> > On Tue, Dec 15, 2009 at 2:19 AM, [email protected] > <[email protected]> wrote: > > Hi all, > > > > I have a NexusFile like this: > > > > #NEXUS > > > > Begin TREES; > > tree test1 = (1,2); > > tree test2 = (B:6.0,(A:5.0,C:3.0,E:4.0) > > Ancestor1:5.0,D:11.0); > > End; > > How can I deal with this ? > > There is a comma missing after the ) closing E:4.0) ie, > > tree test2 = (B:6.0,(A:5.0,C:3.0,E:4.0), <-- NOTE COMMA > > Ancestor1:5.0,D:11.0); > > > -- > “Pessimism of the Intellect; Optimism of the Will” -Antonio Gramsci > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
