Hi Andreas and Shakuntala,
The alignment classes have just been revised and can be now updated from
the repository. As a major improvement the alignment result has become
much easier usable. So, if you're interested in computing something
based on the score, you can now simply apply the dedicated get method
and don't have to care about parsing anymore. I hope that helps.
Cheers
Andreas
--
Dipl.-Bioinform. Andreas Dräger
Eberhard Karls University Tübingen
Center for Bioinformatics (ZBIT)
Sand 1
72076 Tübingen
Germany
Phone: +49-7071-29-70436
Fax: +49-7071-29-5091
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