hi
When i m trying to run this code
package javaapplication10;
import org.biojava.bio.symbol.*;
import org.biojava.bio.seq.*;
public class TranscribeDNAtoRNA {
public static void main(String[] args) {
try {
//make a DNA SymbolList
SymbolList symL = DNATools.createDNA("ATGTAAGGCCAGTGT");
//transcribe it to RNA (after BioJava 1.4 this method is deprecated)
symL = RNATools.transcribe(symL);
//(after BioJava 1.4 use this method instead)
symL = DNATools.toRNA(symL);
//just to prove it worked
System.out.println(symL.seqString());
}
catch (IllegalSymbolException ex) {
//this will happen if you try and make the DNA seq using non IUB
symbols
ex.printStackTrace();
}catch (IllegalAlphabetException ex) {
//this will happen if you try and transcribe a non DNA SymbolList
ex.printStackTrace();
}
}
}
i get following errors:.
*org.biojava.bio.symbol.IllegalAlphabetException: The source alphabet and
translation table source alphabets don't match: RNA and DNA
at
org.biojava.bio.symbol.TranslatedSymbolList.<init>(TranslatedSymbolList.java:75)
at
org.biojava.bio.symbol.SymbolListViews.translate(SymbolListViews.java:125)
at org.biojava.bio.seq.DNATools.toRNA(DNATools.java:490)
at
javaapplication10.TranscribeDNAtoRNA.main(TranscribeDNAtoRNA.java:23)
*
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