I seem to recall that EMBOSS has a secondary structure prediction program. I'm not sure to what extent it would meet your needs, but this might help:
http://emboss.sourceforge.net/docs/emboss_tutorial/node4.html#SECTION00430000000000000000 http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/garnier.html <http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/garnier.html> I also found this site which listed a number of potential solutions: http://molbiol-tools.ca/Protein_secondary_structure.htm <http://molbiol-tools.ca/Protein_secondary_structure.htm>Hope this helps, Mark Fortner blog: http://feeds.feedburner.com/jroller/ideafactory On Thu, May 20, 2010 at 3:43 PM, Andreas Prlic <[email protected]> wrote: > Hi Indu, > > BioJava current can't do secondary structure prediction.... > > Andreas > > On Thu, May 20, 2010 at 1:00 AM, indu pandey <[email protected]> > wrote: > > hi, > > Is there any program in biojava to get the secondry structure of a > protein > > from amino acid sequence. > > thanx and regards > > indu > > _______________________________________________ > > Biojava-l mailing list - [email protected] > > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > > > -- > ----------------------------------------------------------------------- > Dr. Andreas Prlic > Senior Scientist, RCSB PDB Protein Data Bank > University of California, San Diego > (+1) 858.246.0526 > ----------------------------------------------------------------------- > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
