Hello,
I am getting a little frustrated with the wiki page (I guess I don't
spend enough time reading and testing). I have the impression that some
of the documentation relates to version 3 whereas others relate to 1.5
or 1.7.
So sorry if this all sounds a bit confused... ;(
I believe I am using 1.7.1. (I wasn't able to find a readme file that
contains that information) even though I would probably like to use
version 3. But as I am stuck with an older Eclipse version I think it
will be even worse when I try that.
Anyways, I am trying to read in sequence files using
SeqIOTools.fileToBiojava, which seems to be deprecated, with the
following parameters: "genbank", "dna", bufferedReader.
somehow this works with "fasta" but with genbank I get the following
exception:
Execute failed: Unknown file type '524300'
in some cases I get:
Unknown file type '262156'
Does this mean anything to you?
Or how do you read in a sequence file? I am looking for a generic way
that covers many file types (genbank, fasta, swissprot...)
Once I have this I will probably be able to get to the feature
information using the information from the tutorial.
Thanks for your time.
Bernd
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