Hi Jolyon You can help me use the code, I need only search for the file geneid alt_Celera_chr22.gbk. I saw but I do not use code.
Thank you for your attention 2010/9/28 Jolyon Holdstock <[email protected]> > Hi, > > The db_xref annotations aren't picked up (please correct me if I'm > wrong) so depending on how many files you are handling one way is to > change all the gene ID annotations from: > > /db_xref="GeneID:1095448" to /GeneID="1095448" > > You can then create a ComparableTerm to extract these: > > ComparableTerm geneIDTerm = > RichObjectFactory.getDefaultOntology().getOrCreateTerm("GeneID"); > > There is an example in the cookbook on how you can use this: > > http://www.biojava.org/wiki/BioJava:Cookbook:Annotations:List2 > > hope this helps, > > J > > -----Original Message----- > From: Alex Silva [mailto:[email protected]] > Sent: 28 September 2010 02:17 > To: [email protected] > Subject: [Biojava-l] headers .gbk[Scanned] > > Good evening, > > I need a code to read the headers of a file .Gbk. I need to locate the > occurrences of geneid. Can anyone help me? > > -- > Alex Silva > G.R.A. Sistemas Corporativos > msn: [email protected] > 55-9165-7378 > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > > > > > > > > > This email has been scanned by Oxford Gene Technology Security Systems. > > > > > > > > > > > > This email has been scanned by Oxford Gene Technology Security Systems. > -- Alex Silva G.R.A. Sistemas Corporativos msn: [email protected] 55-9165-7378 _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
