We use this in the Mesquite<->R bridge. I haven't worked much on the Java to R side, but it seems to work well.

http://mesquiteproject.org/packages/Mesquite.R/

        -hilmar

On Oct 2, 2010, at 5:15 AM, Pjotr Prins wrote:

Anyone here who has real experience using the JRI? Who would be
interested, and have some exposure to, invoking R from Java through a
native interface in bioinformatics?

Pj.
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