BioJava 3.0.1 has been released and is available from http://www.biojava.org/wiki/BioJava:Download .
The 3.0.1 release is mainly a bug fix release for the recent 3.0 code base, which provides a major rewrite of the biojava. A couple of noteworthy improvements: - core: fixed an issue with sequence index positions, new utility methods for memory efficient parsing of large fasta files - structure: Fixed issues with PDB header parsing and more stability with non-standard PDB files. Added new algorithm to automatically infer protein domain boundaries. - web services: Fixed wrong dependency on old codebase and overall improvements in functionality of remote blast web service calls. - protein modifications: Minor bugfixes In parallel the biojava-legacy code base has been updated to version 1.8.1 and it contains a bug fix related to circular locations. Thanks to all contributors for making this release possible. About BioJava: BioJava is a mature open-source project that provides a framework for processing of biological data. BioJava contains powerful analysis and statistical routines, tools for parsing common file formats, and packages for manipulating sequences and 3D structures. It enables rapid bioinformatics application development in the Java programming language. Happy Biojava-ing Andreas _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
