Hi Andreas,
In fact I'd be happy to help with the development of the tools for
simple physico-chemical properties calculation for peptides. We could
port George’s code (assuming he is happy with this) from BioJava 1.8 but
we can also provide a few other methods. A couple of projects in the lab
where I work would have benefited from having these calculations readily
available.
I was thinking about participation in the Google Summer of Code (GoSC)
this year as a mentor, and I think this would be an easy project for a
student. What do you think about this?
Thank you for your prompt reply.
Regards,
Peter
On 24/02/2011 16:54, Andreas Prlic wrote:
Hi Peter,
if you get a copy of biojava 1.8, it is still there. However I would
like to port this to biojava 3 as well.. George do you want to help me
with that, since you are one of the authors of this package? The basic
support for chemistry in BioJava 3 is a bit better... (e.g. Element
class)
Andreas
On Thu, Feb 24, 2011 at 7:33 AM, Peter Troshin<[email protected]> wrote:
Hi,
I've noticed that BioJava up to about version 1.7 had an
org.biojava.bio.proteomics package, which had methods for isoelectric point
and molecular weight calculations for peptides. I could not find this
package in the BioJava 3.0.1 API. I’d like to use these methods and wonder
if there are any equivalent methods available in the latest version of
BioJava?
Thank you for your help,
Kind regards,
Peter
Dr Peter Troshin
Bioinformatics Software Developer
Phone: +44 (0)1382 388589
Fax: +44 (0)1382 385764
The Barton Group
College of Life Sciences
Medical Sciences Institute
University of Dundee
Dundee
DD1 5EH
UK
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