Hi Bart,
DBLINK is a recent addition to Genbank format and unfortunately bj1
parser does not read it. You can check yourself in
org.biojavax.bio.seq.io.GenbankFormat.
Regards,
George
Quoting Bart Mesuere <[email protected]>:
Hi,
I'm trying to read some genbank files using the 1.7 legacy code. All works
fine but I'm having trouble extracting the projectid located in the DBLINK
field (in bold in the example):
LOCUS NC_009926 374161 bp DNA circular BCT
25-JUL-2008
DEFINITION Acaryochloris marina MBIC11017 plasmid pREB1, complete
sequence.
ACCESSION NC_009926
VERSION NC_009926.1 GI:158339488
*DBLINK Project: 58167*
I already inspected the SimpleRichSequence object with a debugger but
couldn't find anything useful. Is it possible to read this field using
biojava 1.7?
Kind regards,
Bart Mesuere
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