Hi Guys : I am trying to adopt the StructurePairAligner.java program
which Andreas wrote, which is available online. I noticed that
"startingAlignment" "calculatedFragmentPairs" and "jointFragments" are not
in the AlignmentProfressListener class. Is there an updated version of the
pair aligner gui ?
private void notifyStartingAlignment(String name1, Atom[] ca1, String name2,
Atom[] ca2){
for (AlignmentProgressListener li : listeners){
li.startingAlignment(name1, ca1, name2, ca2);
}
}
private void notifyFragmentListeners(List<FragmentPair> fragments){
for (AlignmentProgressListener li : listeners){
li.calculatedFragmentPairs(fragments);
}
}
private void notifyJointFragments(JointFragments[] fragments){
for (AlignmentProgressListener li : listeners){
li.jointFragments(fragments);
}
}
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