HI biojava users, I'd like to align N DNA sequences to my reference sequence. I don't know which strand of my N query sequences will be the best match for my query sequence.
Right, now I do this by doing 2N pairwise alignments where I separately align each query and its reverse complement to the reference. Is there an easier, more efficient way to do this and build the alignment profile for my N sequences to the reference? Thanks J _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
