On Mon, May 13, 2013 at 3:21 PM, Janier J. Ramírez
<[email protected]> wrote:
> There is in Biojava a parser for some of the next file formats ?? :
> .sam
> .bam
> ...

I'm not sure what exactly is in BioJava for these formats, but I would
suggest you (also) consider Picard for working with SAM/BAM in Java.

Peter

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