That output looks quite different from that described in the Reference Manual <http://bidd.cz3.nus.edu.sg/prof/manual/prof.htm>. Maybe there's a parameter in the API to output GIST or CSV files?
On Tue, Jul 23, 2013 at 12:17 PM, Khalil El Mazouari < [email protected]> wrote: > Hi, > > I am trying to use the PROFEAT APIs for solvent accessibility calculation. > > I can't understand the output. And the PROFEAT publication is not clear in > this regards. > > Any help on how to interpret these results is very welcome ;) > > Thanks > > khalil > > > > =======SOLVENTACCESSIBILITY======= > GROUP1 = 0.37142857142857144 > GROUP2 = 0.3142857142857143 > GROUP3 = 0.3142857142857143 > > > =======SOLVENTACCESSIBILITY======= > 1<=>1 = 0.11594202898550725 > 2<=>2 = 0.08695652173913043 > 3<=>3 = 0.08695652173913043 > 1<=>2 = 0.2463768115942029 > 1<=>3 = 0.2753623188405797 > 2<=>3 = 0.18840579710144928 > > > =======SOLVENTACCESSIBILITY======= > GROUP1 = {FIRST50=0.38571428571428573, FIRST25=0.24285714285714285, > ALL=0.9857142857142858, FIRST=0.02857142857142857, > FIRST75=0.6428571428571429} > GROUP2 = {FIRST50=0.5285714285714286, FIRST25=0.2, ALL=1.0, > FIRST=0.014285714285714285, FIRST75=0.7} > GROUP3 = {FIRST50=0.5857142857142857, FIRST25=0.21428571428571427, > ALL=0.9714285714285714, FIRST=0.11428571428571428, > FIRST75=0.7428571428571429} > > > ----- > > Confidentiality Notice: This e-mail and any files transmitted with it are > private and confidential and are solely for the use of the addressee. It > may contain material which is legally privileged. If you are not the > addressee or the person responsible for delivering to the addressee, please > notify that you have received this e-mail in error and that any use of it > is strictly prohibited. It would be helpful if you could notify the author > by replying to it. > > > > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
