So I just installed the latest version (ยง59 (3842)) and now my iTerm shortcuts launch Terminal and then iTerm. I'm using the script qs_launcher.py and have QS cataloging a directory that is a list of links to qslauncher.py each named for the Bookmark they open.
Previously invoking one of these just started a new iTerm window now when I invoke one I first get a Terminal window and then the selected iTerm bookmark opens.
