Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
484ab385 by Andreas Tille at 2020-04-06T14:01:48+02:00
Revert "Remove edger from explicit mentioning since we can not guarantee
thet the package is up to date. Last versions are needing locfit which is not
distributable."
This reverts commit f77b499723bc7ee0ab87fa9edcfac05a97eb6ece.
- - - - -
4 changed files:
- tasks/bio
- tasks/bio-ngs
- tasks/cloud
- tasks/statistics
Changes:
=====================================
tasks/bio
=====================================
@@ -1008,7 +1008,7 @@ Recommends: r-bioc-mofa
Recommends: r-bioc-multiassayexperiment
-Recommends: r-bioc-limma
+Recommends: r-bioc-limma, r-bioc-edger
Recommends: r-bioc-bitseq, r-bioc-pcamethods, r-cran-samr
=====================================
tasks/bio-ngs
=====================================
@@ -15,6 +15,7 @@ Recommends:
wham-align,
maq,
picard-tools,
+ r-bioc-edger,
r-bioc-hilbertvis,
rna-star,
samtools,
=====================================
tasks/cloud
=====================================
@@ -69,5 +69,5 @@ X-End-Category: Tools for the molecular biologist.
X-Begin-Category: Others
Recommends: aevol, python3-biomaj3-cli, bioperl, bioperl-run,
clonalframe, circos, datamash, prodigal,
- python3-biopython, qiime, r-cran-pvclust,
+ python3-biopython, qiime, r-bioc-edger, r-cran-pvclust,
r-cran-vegan
=====================================
tasks/statistics
=====================================
@@ -4,7 +4,7 @@ Description: Debian Med statistics
This metapackage will install packages which are helpful to do statistics
with a special focus on tasks in medical care.
-Recommends: r-bioc-limma
+Recommends: r-bioc-edger, r-bioc-limma
Why: Statistical analysis of transcriptome expression assays.
Recommends: r-bioc-qvalue
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/484ab385e6bd74a94db7efb431cd6b463ff8e500
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/484ab385e6bd74a94db7efb431cd6b463ff8e500
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