Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: c53d3a72 by Andreas Tille at 2020-05-11T17:52:20+02:00 Inject packages mentioned in https://lists.debian.org/debian-med/2020/05/msg00093.html - - - - - 1 changed file: - tasks/covid-19 Changes: ===================================== tasks/covid-19 ===================================== @@ -80,7 +80,6 @@ Recommends: qcat Recommends: pycoqc Recommends: nanoplot -Homepage: https://github.com/wdecoster/NanoPlot Recommends: fastqc @@ -133,6 +132,69 @@ Recommends: abacas Recommends: quast +X-Comment: https://lists.debian.org/debian-med/2020/05/msg00093.html + +Recommends: bustools + +Recommends: kallisto + +Recommends: salmon + +Recommends: rna-star + +Recommends: fastqc + +Recommends: allelecount + +Recommends: ascat +Homepage: https://github.com/Crick-CancerGenomics/ascat + +Recommends: freebayes + +Recommends: manta + +Recommends: qualimap + +Recommends: strelka +Homepage: https://github.com/Illumina/strelka/ + +Recommends: tiddit +Homepage: https://github.com/SciLifeLab/TIDDIT + +Recommends: vep +X-Comment: FIXME: Please confirm that you mean +Homepage: https://github.com/Ensembl/ensembl-vep + +Recommends: busco +Homepage: https://gitlab.com/ezlab/busco + +Recommends: cat +Homepage: https://github.com/dutilh/CAT + +Recommends: centrifuge + +Recommends: filtlong + +Recommends: megahit + +Recommends: metabat +Homepage: https://bitbucket.org/berkeleylab/metabat + +Recommends: nanolyse +Homepage: https://pypi.org/project/NanoLyse/1.1.0/ + +Recommends: porechop + +Recommends: changeo + +Recommends: muscle + +Recommends: python3-presto + +Recommends: r-cran-alakazam, r-cran-shazam, r-cran-tigger + +Recommends: vsearch + X-Comment: </Jun_Aruga> X-Comment: TODO: Check out View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/c53d3a7269e0c847954be602a59ff63236e5ad2a -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/c53d3a7269e0c847954be602a59ff63236e5ad2a You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ Blends-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
