Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
294bac0c by Andreas Tille at 2020-05-12T13:45:48+02:00
Update query data
- - - - -
4c338778 by Andreas Tille at 2020-05-13T12:03:27+02:00
Nanolyse and graphmap2 are injected into Salsa
- - - - -
2 changed files:
- covid-19_doc/bio_covid-19_dependencies_result
- tasks/covid-19
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,16 +1,15 @@
-Last-Update: Tue, 12 May 2020 10:50:33 +0200
+Last-Update: Tue, 12 May 2020 11:43:23 +0000
package | architectures | section |
releases | conda | bio.tools
-----------------------------+---------------------+----------+---------------------------------------------+--------------------------+--------------
abacas | all | main |
buster,bullseye,sid | |
allelecount | | |
| |
- ascat | | |
| |
bcftools | amd64,arm64,ppc64el | main |
buster,bullseye,sid | bcftools |
bcftools
bedtools | amd64,arm64,ppc64el | main |
buster,bullseye,sid | biotools |
bedtools
bio-guppy | | |
| |
bowtie2 | amd64,arm64,ppc64el | main |
buster,bullseye,sid | bowtie2 | bowtie2
busco | | |
| |
- bustools | amd64 | main | bullseye,sid
| bustools | BUStools
+ bustools | amd64,arm64,ppc64el | main | bullseye,sid
| bustools | BUStools
bwa | amd64,arm64,ppc64el | main |
buster,bullseye,sid | bwa | BWA
cat | | |
| |
centrifuge | amd64 | main |
buster,bullseye,sid | centrifuge |
Centrifuge
@@ -30,7 +29,7 @@ Last-Update: Tue, 12 May 2020 10:50:33 +0200
libhts-dev | amd64,arm64,ppc64el | main |
buster,bullseye,sid | htslib |
lumpy | | |
| |
manta | | |
https://salsa.debian.org/med-team/manta | |
- megahit | | |
https://salsa.debian.org/med-team/megahit | |
+ megahit | | | new
| |
metabat | | |
| |
minia | amd64,arm64,ppc64el | main |
buster,bullseye,sid | | minia
minimap2 | amd64,arm64,ppc64el | main |
buster,bullseye,sid | minimap2 |
@@ -46,7 +45,7 @@ Last-Update: Tue, 12 May 2020 10:50:33 +0200
porechop | amd64,arm64,ppc64el | main |
buster,bullseye,sid | |
presto | | |
| |
prodigal | amd64,arm64,ppc64el | main |
buster,bullseye,sid | |
- pycoqc | all | main | sid
| |
+ pycoqc | all | main | bullseye,sid
| |
python3-biopython | amd64,arm64,ppc64el | main |
buster,bullseye,sid | |
Biopython
python3-deeptools | all | main | bullseye,sid
| deeptools | deeptools
python3-htseq | amd64,arm64,ppc64el | main |
buster,bullseye,sid | | htseq
@@ -79,6 +78,7 @@ Last-Update: Tue, 12 May 2020 10:50:33 +0200
r-cran-shazam | all | main |
buster,bullseye,sid | r-shazam |
r-cran-tigger | all | main |
buster,bullseye,sid | r-tigger |
rna-star | amd64,arm64,ppc64el | main |
buster,bullseye,sid | star | star
+ r-other-ascat | | |
| |
salmon | amd64 | main |
buster,bullseye,sid | salmon | salmon
samtools | amd64,arm64,ppc64el | main |
buster,bullseye,sid | samtools |
samtools
snakemake | all | main |
buster,bullseye,sid | snakemake |
snakemake
=====================================
tasks/covid-19
=====================================
@@ -84,7 +84,6 @@ Recommends: nanoplot
Recommends: fastqc
Recommends: graphmap2
-Homepage: https://github.com/lbcb-sci/graphmap2
Recommends: samtools
@@ -180,7 +179,6 @@ Recommends: metabat
Homepage: https://bitbucket.org/berkeleylab/metabat
Recommends: nanolyse
-Homepage: https://pypi.org/project/NanoLyse/1.1.0/
Recommends: porechop
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/compare/154220e95faa271e96979606f50d1cdb0a4c63cd...4c338778b16867f152e91f1f2039a2723ce208f9
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/compare/154220e95faa271e96979606f50d1cdb0a4c63cd...4c338778b16867f152e91f1f2039a2723ce208f9
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