Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
294f89db by Andreas Tille at 2020-05-27T23:07:28+02:00
lumpy is lumpy-sv, new push in UDD uncovered more accepted packages and
packages in new
- - - - -
2 changed files:
- covid-19_doc/bio_covid-19_dependencies_query
- covid-19_doc/bio_covid-19_dependencies_result
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_query
=====================================
@@ -108,7 +108,7 @@ INSERT INTO covid19_packages VALUES
('kraken2'),
('radiant'), -- == krona - Debian had to change the name
('lighter'),
-('lumpy'),
+('lumpy-sv'),
('magicblast'),
('manta'),
('mash'),
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Wed, 27 May 2020 22:30:50 +0200
+Last-Update: Wed, 27 May 2020 23:05:59 +0200
package | architectures | section |
releases | conda | bio.tools
---------------------+---------------------+----------+----------------------------------------------+----------------------+--------------
@@ -13,7 +13,7 @@ Last-Update: Wed, 27 May 2020 22:30:50 +0200
busco | all | main | bullseye,sid
| busco |
bustools | amd64,arm64,ppc64el | main | bullseye,sid
| bustools | BUStools
bwa | amd64,arm64,ppc64el | main | buster,bullseye,sid
| bwa | BWA
- cat-bat | | | new
| cat |
+ cat-bat | amd64,arm64,ppc64el | main | sid
| cat |
centrifuge | amd64 | main | buster,bullseye,sid
| centrifuge | Centrifuge
changeo | all | main | buster,bullseye,sid
| changeo |
cutadapt | all | main | buster,bullseye,sid
| cutadapt | cutadapt
@@ -22,17 +22,17 @@ Last-Update: Wed, 27 May 2020 22:30:50 +0200
fastp | amd64,arm64,ppc64el | main | buster,bullseye,sid
| fastp |
fastqc | all | main | buster,bullseye,sid
| fastqc | FastQC
filtlong | amd64,arm64,ppc64el | main | bullseye,sid
| filtlong |
- flash | | | new
| flash |
+ flash | amd64,arm64,ppc64el | main | sid
| flash |
freebayes | amd64,arm64,ppc64el | main | buster,bullseye,sid
| freebayes | freebayes
gatk | | |
https://salsa.debian.org/med-team/gatk | gatk4 |
graphmap2 | | |
https://salsa.debian.org/med-team/graphmap2 | graphmap |
- ivar | | | new
| ivar |
+ ivar | amd64,arm64 | main | sid
| ivar |
kallisto | amd64,arm64,ppc64el | main | bullseye,sid
| kallisto | kallisto
kmc | amd64,arm64,ppc64el | main | buster,bullseye,sid
| kmc | KMC
kraken2 | amd64,arm64,ppc64el | main | bullseye,sid
| kraken2 | kraken
libhts-dev | amd64,arm64,ppc64el | main | buster,bullseye,sid
| htslib |
lighter | | |
| |
- lumpy | | |
| |
+ lumpy-sv | | |
https://salsa.debian.org/med-team/lumpy-sv | lumpy-sv |
magicblast | | |
| |
manta | | |
https://salsa.debian.org/med-team/manta | manta |
mash | amd64,arm64,ppc64el | main | buster,bullseye,sid
| mash |
@@ -72,9 +72,9 @@ Last-Update: Wed, 27 May 2020 22:30:50 +0200
r-cran-shazam | all | main | buster,bullseye,sid
| r-shazam |
r-cran-tigger | all | main | buster,bullseye,sid
| r-tigger |
rna-star | amd64,arm64,ppc64el | main | buster,bullseye,sid
| star | star
- r-other-ascat | | | new
| ascat |
+ r-other-ascat | all | main | sid
| ascat |
salmon | amd64 | main | buster,bullseye,sid
| salmon | salmon
- samclip | | |
| |
+ samclip | | |
https://salsa.debian.org/med-team/samclip | samclip |
samtools | amd64,arm64,ppc64el | main | buster,bullseye,sid
| samtools | samtools
sepp | | |
https://salsa.debian.org/med-team/sepp | sepp |
seqtk | amd64,arm64,ppc64el | main | buster,bullseye,sid
| seqtk | seqtk
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/294f89dbc20eb282e2e3f54190a66b36a098b695
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/294f89dbc20eb282e2e3f54190a66b36a098b695
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