Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
76bb459b by Andreas Tille at 2020-06-18T14:53:19+02:00
magicblast is ncbi-magicblast
- - - - -
4 changed files:
- covid-19_doc/bio_covid-19_dependencies_query
- covid-19_doc/bio_covid-19_dependencies_result
- tasks/bio
- tasks/covid-19
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_query
=====================================
@@ -142,7 +142,7 @@ INSERT INTO covid19_packages VALUES
(DEFAULT,'lighter'),
(DEFAULT,'r-cran-lsd'),
(DEFAULT,'lumpy-sv'),
-(DEFAULT,'magicblast'),
+(DEFAULT,'ncbi-magicblast'),
(DEFAULT,'manta'),
(DEFAULT,'marginalign'),
(DEFAULT,'mash'),
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 18 Jun 2020 14:12:38 +0200
+Last-Update: Thu, 18 Jun 2020 14:44:56 +0200
package | architectures | section |
releases | conda | bio.tools |
testsuite
------------------------+---------------------+----------+-----------------------------------------------------+----------------------+---------------+-------------------------------------
@@ -77,7 +77,7 @@ Last-Update: Thu, 18 Jun 2020 14:12:38 +0200
lighter | | | new
| lighter | |
r-cran-lsd | | |
https://salsa.debian.org/r-pkg-team/r-cran-lsd | |
|
lumpy-sv | | | new
| lumpy-sv | |
- magicblast | | |
| | |
+ ncbi-magicblast | | |
https://salsa.debian.org/med-team/ncbi-magicblast | magicblast |
|
manta | | |
https://salsa.debian.org/med-team/manta | manta |
|
marginalign | | |
| | |
mash | amd64,arm64,ppc64el | main | buster,bullseye,sid
| mash | |
autopkgtest
=====================================
tasks/bio
=====================================
@@ -872,6 +872,8 @@ Recommends: ncbi-acc-download
Recommends: ncbi-entrez-direct
+Recommends: ncbi-magicblast
+
Recommends: ncbi-seg
Recommends: nextsv
=====================================
tasks/covid-19
=====================================
@@ -229,6 +229,8 @@ Recommends: lighter
Recommends: lumpy-sv
+Recommends: ncbi-magicblast
+
Recommends: nanofilt
Recommends: python3-nanomath
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/76bb459bc93f1f926c0d354c02026d4f75e53df4
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/76bb459bc93f1f926c0d354c02026d4f75e53df4
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