Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
e7ca7bd7 by Andreas Tille at 2020-06-22T14:51:30+02:00
Cleanup some remarks
- - - - -
5c362fa5 by Andreas Tille at 2020-06-22T14:52:54+02:00
Add medaka
- - - - -
0baf2c17 by Andreas Tille at 2020-06-22T14:55:11+02:00
Update UDD
- - - - -
3 changed files:
- covid-19_doc/bio_covid-19_dependencies_result
- tasks/bio
- tasks/covid-19
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sun, 21 Jun 2020 23:04:19 +0200
+Last-Update: Mon, 22 Jun 2020 14:53:02 +0200
package | architectures | section |
releases | conda | bio.tools |
testsuite
------------------------+---------------------+----------+-----------------------------------------------------+----------------------+---------------+-------------------------------------
@@ -68,7 +68,7 @@ Last-Update: Sun, 21 Jun 2020 23:04:19 +0200
libhts-dev | amd64,arm64,ppc64el | main | buster,bullseye,sid
| htslib | |
autopkgtest
python3-htseq | amd64,arm64,ppc64el | main | buster,bullseye,sid
| htseq | htseq |
autopkgtest
iitii | amd64 | main | sid
| | |
autopkgtest
- python3-intake | | |
https://salsa.debian.org/med-team/intake | |
|
+ python3-intake | | | new
| | |
ivar | amd64,arm64 | main | bullseye,sid
| ivar | |
autopkgtest
kallisto | amd64,arm64,ppc64el | main | bullseye,sid
| kallisto | kallisto |
autopkgtest
kmc | amd64,arm64,ppc64el | main | buster,bullseye,sid
| kmc | KMC |
autopkgtest
@@ -163,7 +163,7 @@ Last-Update: Sun, 21 Jun 2020 23:04:19 +0200
rna-star | amd64,arm64,ppc64el | main | buster,bullseye,sid
| star | star |
autopkgtest
streamformatics | | |
| | |
strelka | | |
https://salsa.debian.org/med-team/strelka | strelka |
|
- python3-streamz | | |
| | |
+ python3-streamz | | | new
| | |
tiddit | amd64,arm64,ppc64el | main | sid
| tiddit | |
tombo | | |
https://salsa.debian.org/med-team/tombo | ont-tombo |
|
tophat-recondition | all | main | bullseye,sid
| | |
=====================================
tasks/bio
=====================================
@@ -812,6 +812,8 @@ X-Importance: efficient
Recommends: mauve-aligner
+Recommends: medaka
+
Recommends: meme
License: non-free for commercial purpose
(http://meme.nbcr.net/meme/COPYRIGHT.html)
=====================================
tasks/covid-19
=====================================
@@ -229,6 +229,8 @@ Recommends: lighter
Recommends: lumpy-sv
+Recommends: medaka
+
Recommends: ncbi-magicblast
Recommends: nanofilt
@@ -264,7 +266,6 @@ Recommends: pyomo
Recommends: python3-biopython
Suggests: python3-mmtf
-Remark: https://github.com/rcsb/mmtf-python
Recommends: python3-vcf
@@ -360,11 +361,6 @@ Recommends: imagej
Recommends: libgdcm-tools
-Recommends: slicer
-Remark: slicer was removed from Debian (see #644352)
- Its re-introduction into Debian is prepared by the Debian Med team here
- https://salsa.debian.org/med-team/slicer
-
Recommends: orthanc
Recommends: orthanc-wsi
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/compare/8d564eb31555007ee353d00ff09b3f11f4ec5ea1...0baf2c170a92b267462996bf57ea737cd5709835
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/compare/8d564eb31555007ee353d00ff09b3f11f4ec5ea1...0baf2c170a92b267462996bf57ea737cd5709835
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