Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: dfcf4492 by Andreas Tille at 2020-06-29T08:22:24+02:00 Add trf - - - - - 1 changed file: - tasks/bio Changes: ===================================== tasks/bio ===================================== @@ -1394,6 +1394,8 @@ X-Recommends: treevolve X-Comment: Homepage of software vanished, packaging in SVN is obviosely stalled Feel free to delete the 'X-' in front if you intend to do something on this package +Recommends: trf + Recommends: trinityrnaseq Recommends: uc-echo @@ -2684,20 +2686,6 @@ Pkg-Description: annotate genomes and create genome databases especially useful for emerging model organism projects with minimal bioinformatics expertise and computer resources -Recommends: rmblast -Homepage: http://tandem.bu.edu/trf/trf.html -License: Same as blast2 -Pkg-Description: RepeatMasker compatible version of the standard NCBI BLAST - RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST - suite. The primary difference between this distribution and the NCBI - distribution is the addition of a new program "rmblastn" for use with - RepeatMasker and RepeatModeler. - RMBlast supports RepeatMasker searches by adding a few necessary features - to the stock NCBI blastn program. These include: Support for custom matrices - ( without KA-Statistics ). Support for cross_match-like complexity adjusted - scoring. Cross_match is Phil Green's seeded smith-waterman search algorithm. - Support for cross_match-like masklevel filtering. - Recommends: e-hive Homepage: http://www.ensembl.org/info/docs/eHive/index.html License: Not specified View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/dfcf44928f3e416bebc9ac784d06267a4d2dc89c -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/dfcf44928f3e416bebc9ac784d06267a4d2dc89c You're receiving this email because of your account on salsa.debian.org.
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