Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
bc3ae844 by Andreas Tille at 2023-01-12T09:09:38+01:00
Add muscle3 to tasks
- - - - -
34e2039d by Andreas Tille at 2023-01-12T09:09:38+01:00
Add libbiojava6-java
- - - - -
5 changed files:
- tasks/bio
- tasks/bio-dev
- tasks/bio-phylogeny
- tasks/cloud
- tasks/covid-19
Changes:
=====================================
tasks/bio
=====================================
@@ -48,7 +48,7 @@ Remark: Dead upstream
Suggests: conda-package-handling
-Recommends: boxshade, gff2aplot, muscle, sim4, sibsim4, tabix, wise
+Recommends: boxshade, gff2aplot, muscle, muscle3, sim4, sibsim4, tabix,
wise
Recommends: maqview
=====================================
tasks/bio-dev
=====================================
@@ -40,7 +40,7 @@ Recommends: python3-tinyalign
Recommends: ruby-bio
-Recommends: libbiojava-java, libbiojava4-java, libbiojava5-java
+Recommends: libbiojava-java, libbiojava4-java, libbiojava5-java,
libbiojava6-java
Recommends: libgenome-dev, libmuscle-dev, libmems-dev
=====================================
tasks/bio-phylogeny
=====================================
@@ -29,7 +29,7 @@ X-Comment: treetool is removed from Debian because it is not
maintained upstream
X-Begin-Category: Sequence alignments and related programs.
-Recommends: muscle
+Recommends: muscle, muscle3
Recommends: t-coffee
=====================================
tasks/cloud
=====================================
@@ -20,7 +20,7 @@ Recommends: amap-align, blast2, biosquid, boxshade,
cassiopee, cdbfasta,
cd-hit, clustalo, clustalw, conservation-code, dialign, dialign-tx,
emboss, embassy-domalign, embassy-domainatrix, embassy-domsearch,
embassy-phylip, exonerate, gff2aplot, gff2ps, glam2, gmap, hmmer,
- jellyfish, kalign, mafft, mlv-smile, mummer, muscle, neobio, poa,
+ jellyfish, kalign, mafft, mlv-smile, mummer, muscle, muscle3,
neobio, poa,
prank, probcons, proda, sibsim4, sigma-align, sim4, snap,
squizz, t-coffee, wise
X-End-Category: Sequence alignments and related programs.
=====================================
tasks/covid-19
=====================================
@@ -192,7 +192,7 @@ Recommends: porechop
Recommends: changeo
-Recommends: muscle
+Recommends: muscle, muscle3
Recommends: plasmidid
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/compare/1392694949d36956a79743ef1caa7cd071f3f593...34e2039de3df20241025fc6097a21b338275abd8
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/compare/1392694949d36956a79743ef1caa7cd071f3f593...34e2039de3df20241025fc6097a21b338275abd8
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