Author: mhanke-guest Date: Mon Apr 26 23:47:46 2010 New Revision: 2155 URL: http://svn.debian.org/viewsvn/blends?rev=2155&view=rev
Log: Sync neuroscience task with changes in med/imaging Modified: projects/science/trunk/debian-science/tasks/neuroscience-cognitive Modified: projects/science/trunk/debian-science/tasks/neuroscience-cognitive URL: http://svn.debian.org/viewsvn/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive?rev=2155&view=diff&r1=2155&r2=2154&p1=projects/science/trunk/debian-science/tasks/neuroscience-cognitive&p2=projects/science/trunk/debian-science/tasks/neuroscience-cognitive ============================================================================== --- projects/science/trunk/debian-science/tasks/neuroscience-cognitive (original) +++ projects/science/trunk/debian-science/tasks/neuroscience-cognitive Mon Apr 26 23:47:46 2010 @@ -41,6 +41,7 @@ Depends: fsl Why: Comprehensive MRI analysis suite. +Registration: http://www.fmrib.ox.ac.uk/fsldownloads/ Published-Title: Advances in functional and structural MR image analysis and implementation as FSL Published-Authors: S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, P.M. Matthews Published-In: NeuroImage, 23:208-219 @@ -50,6 +51,7 @@ Depends: fslview +Registration: http://www.fmrib.ox.ac.uk/fsldownloads/ Published-Title: Advances in functional and structural MR image analysis and implementation as FSL Published-Authors: S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, P.M. Matthews Published-In: NeuroImage, 23:208-219 @@ -95,6 +97,7 @@ Depends: dicom3tools Why: Supports conversion from proprietary formats, such as GE into DICOM. + Depends: psychopy Published-Title: PsychoPy - Psychophysics software in Python Published-Authors: J. W. Peirce @@ -102,6 +105,7 @@ Published-Year: 2007 Published-DOI: 10.1016/j.jneumeth.2006.11.017 + Depends: bioimagesuite Homepage: http://www.bioimagesuite.org/ License: GPL @@ -123,12 +127,13 @@ compiling it from source and packaging issues at http://research.yale.edu/bioimagesuite/forum/index.php?board=12.0 + Depends: afni Homepage: http://afni.nimh.nih.gov/ WNPP: 409849 Responsible: Michael Hanke <[email protected]> License: GPL -Pkg-URL: http://sourceforge.net/project/showfiles.php?group_id=61662&package_id=60298 +Pkg-URL: http://neuro.debian.net/pkgs/afni.html Pkg-Description: environment for processing and displaying functional MRI data AFNI is an environment for processing and displaying functional MRI data. It provides a complete analysis toolchain, including @@ -200,6 +205,7 @@ labeling of the cortical folds according to a nomenclature of the main sulci. + Depends: lipsia Published-Title: Lipsia—a new software system for the evaluation of functional magnetic resonance images of the human brain Published-Authors: Gabriele Lohmann, Karsten Müller, Volker Bosch, Heiko Mentzel, Sven Hessler, Lin Chen, S. Zysset, D. Yves von Cramon @@ -208,6 +214,7 @@ Published-URL: http://www.medicalimagingandgraphics.com/article/S0895-6111(01)00008-8 Published-DOI: 10.1016/S0895-6111(01)00008-8 + Depends: openmeeg Homepage: http://www-sop.inria.fr/odyssee/software/OpenMEEG License: CeCILL-B @@ -224,6 +231,7 @@ regularization: the Minimum Norm, and the L2 and L1 norms of the surface gradient of the sources [Adde et al, 2005]. + Depends: visionegg Homepage: http://www.visionegg.org License: LGPL @@ -254,3 +262,35 @@ data. The data handling and storage uses a MySQL-server. The package is written in pure Python. + +Depends: mricron +Homepage: http://www.cabiatl.com/mricro/mricron/index.html +License: BSD +Language: Pascal +Responsible: Michael Hanke <[email protected]> +WNPP: 579231 +Pkg-URL: http://neuro.debian.net/pkgs/mricron.html +Pkg-Description: magnetic resonance image conversion, viewing and analysis + GUI-based visualization and analysis tool for (functional) magnetic reasonance + imaging. MRIcron can be used to create 2D or 3D renderings of statistical + overlay maps on brain anatomy images. Moreover, it aids drawing anatomical + regions-of-interest (ROI), or lesion mapping, as well as basic analysis + of functional timeseries (e.g. creating plots of peristimulus signal-change). + . + This package also provides 'dcm2nii' that supports converting DICOM and PAR/REC + images into the NIfTI format. + + +Depends: voxbo +Homepage: http://www.voxbo.org +License: GPL-3 +Language: C++ +Responsible: Michael Hanke <[email protected]> +WNPP: 579284 +Pkg-Description: processing, statistical analysis, and display of brain imaging data + This is a toolkit for analysis of functional neuroimaging (chiefly + fMRI) experiments and voxel-based lesion-behavior mapping. VoxBo + supports the modified GLM (for autocorrelated data), as well as the + standard GLM for non-autocorrelated data. The toolkit is designed to be + interoperable with AFNI, FSL, SPM and others. +Registration: http://voxbo.org/usage.html _______________________________________________ Blends-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/blends-commit
