Author: tille Date: Fri Jun 25 05:52:10 2010 New Revision: 2232 URL: http://svn.debian.org/viewsvn/blends?rev=2232&view=rev
Log: Removed additional information from now official packages Modified: projects/med/trunk/debian-med/tasks/bio projects/med/trunk/debian-med/tasks/bio-dev projects/med/trunk/debian-med/tasks/imaging projects/med/trunk/debian-med/tasks/physics Modified: projects/med/trunk/debian-med/tasks/bio URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2232&view=diff&r1=2232&r2=2231&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio ============================================================================== --- projects/med/trunk/debian-med/tasks/bio (original) +++ projects/med/trunk/debian-med/tasks/bio Fri Jun 25 05:52:10 2010 @@ -329,6 +329,18 @@ Suggests: seqan-apps +Depends: ncoils + +Depends: gentle + +Depends: gmap +Published-Title: GMAP: a genomic mapping and alignment program for mRNA and EST sequences +Published-Authors: Thomas D. Wu, Colin K. Watanabe +Published-In: Bioinformatics +Published-Year: 2005 +Published-URL: http://bioinformatics.oupjournals.org/cgi/content/full/21/9/1859 + + Depends: r-other-genabel Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/ Responsible: Steffen Moeller <[email protected]> @@ -851,18 +863,6 @@ * E-Cell Modeling Environment (or E-Cell ME) * E-Cell Analysis Toolkit. -Depends: ncoils -Homepage: http://www.russell.embl.de/cgi-bin/coils-svr.pl -Responsible: Steffen Moeller <[email protected]> -WNPP: 299856 -License: GPL -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ciols/trunk/ -Pkg-Description: coiled coil secondary structure prediction - The program predicts the coiled coil secondary structure predictions - from protein sequences. The algorithm was published in - Lupas, van Dyke & Stock, Predicting coiled coils from - protein sequences Science, 252, 1162-1164, 1991. - Depends: haploview Homepage: http://www.broad.mit.edu/mpg/haploview/ Responsible: Steffen Moeller <[email protected]> @@ -3183,19 +3183,6 @@ of new molecular-biology-related services by NCBI. It allows you to read and write NCBI ASN.1 files, builds Cn3D, etc. -Depends: gmap -Homepage: http://research-pub.gene.com/gmap/ -License: free -Responsible: Shaun Jackman <[email protected]> -Pkg-Description: A Genomic Mapping and Alignment Program for mRNA and EST Sequences - GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and - GSNAP: Genomic Short-read Nucleotide Alignment Program -Published-Title: GMAP: a genomic mapping and alignment program for mRNA and EST sequences -Published-Authors: Thomas D. Wu, Colin K. Watanabe -Published-In: Bioinformatics -Published-Year: 2005 -Published-URL: http://bioinformatics.oupjournals.org/cgi/content/full/21/9/1859 - Depends: treetime Homepage: http://treetime.linhi.com/ License: GPL @@ -3203,19 +3190,6 @@ TreeTime is controlled by input files in nexus format and does bayesian sampling of phylogenetic trees from these data. -Depends: gentle -Homepage: http://gentle.magnusmanske.de -License: GPL -Responsible: Steffen Moeller <[email protected]> -WNPP: 582959 -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/gentle/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/gentle/trunk/ -Pkg-Description: suite to plan genetic cloning - GENtle is a software for DNA and amino acid editing, database - management, plasmid maps, restriction and ligation, alignments, - sequencer data import, calculators, gel image display, PCR, and - much more. - Depends: igv Homepage: http://www.broadinstitute.org/igv License: LGPL Modified: projects/med/trunk/debian-med/tasks/bio-dev URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=2232&view=diff&r1=2232&r2=2231&p1=projects/med/trunk/debian-med/tasks/bio-dev&p2=projects/med/trunk/debian-med/tasks/bio-dev ============================================================================== --- projects/med/trunk/debian-med/tasks/bio-dev (original) +++ projects/med/trunk/debian-med/tasks/bio-dev Fri Jun 25 05:52:10 2010 @@ -74,6 +74,8 @@ Depends: seqan-dev +Depends: libbio-mage-utils-perl + Depends: bioconductor Homepage: http://www.bioconductor.org/ Responsible: Debian CRAN/BioConductor/Omegahat packaging team <[email protected]> @@ -171,22 +173,6 @@ investigate gene expression data from microarrays with the statistical package R. -Depends: libbio-mage-utils-perl -Homepage: http://mged.sourceforge.net/ -License: MIT/X -WNPP: 476202 -Responsible: Charles Plessy <[email protected]> -Pkg-URL: http://mentors.debian.net/debian/pool/main/l/libbio-mage-utils-perl/ -Pkg-Description: Extra modules for classes in the MAGE package: MAGE - MAGE-TAB (MicroArray Gene Expression Tabular) format is a standard from the - Microarray Gene Expression Data Society (MGED). This package contains Perl - modules in the Bio::MAGE hierarchy to manipulate MIAME-compliant (Minimum - Information About a Microarray Experiment) records of microarray ("DNA chips") - experiments. - . - Bio-MAGE-Utils contains extra modules for handling MAGE XML and MGED ontology, - as well as SQL utilities. - Depends: libsbml1 Homepage: http://www.sbml.org/ License: LGPL Modified: projects/med/trunk/debian-med/tasks/imaging URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/imaging?rev=2232&view=diff&r1=2232&r2=2231&p1=projects/med/trunk/debian-med/tasks/imaging&p2=projects/med/trunk/debian-med/tasks/imaging ============================================================================== --- projects/med/trunk/debian-med/tasks/imaging (original) +++ projects/med/trunk/debian-med/tasks/imaging Fri Jun 25 05:52:10 2010 @@ -98,6 +98,8 @@ Depends: pixelmed-java +Depends: vmtk + Depends: bioimagesuite Homepage: http://www.bioimagesuite.org/ License: GPL @@ -681,7 +683,7 @@ Published-In: NeuroImage, 49: 2457-2466 Published-Year: 2010 Published-DOI: 10.1016/j.neuroimage.2009.09.062 -Institution: UCLA Center for Computation Biology +X-Institution: UCLA Center for Computation Biology Depends: itksnap @@ -716,19 +718,6 @@ Published-Year: 2008 Published-DOI: 10.1371/journal.pbio.0060159 -Depends: vmtk -Homepage: http://www.vmtk.org -License: BSD, Modified MIT -WNPP: 584222 -Responsible: Johannes Ring <[email protected]> -Vcs-Svn: svn://svn.debian.org/svn/debian-science/packages/vmtk/trunk -Vcs-Browser: http://svn.debian.org/wsvn/debian-science/packages/vmtk/trunk/ -Pkg-Description: the Vascular Modeling Toolkit - The Vascular Modeling Toolkit is a collection of libraries and tools - for 3D reconstruction, geometric analysis, mesh generation and surface - data analysis for image-based modeling of blood vessels. - - Depends: sigviewer License: GPL Responsible: Yaroslav Halchenko <[email protected]> Modified: projects/med/trunk/debian-med/tasks/physics URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/physics?rev=2232&view=diff&r1=2232&r2=2231&p1=projects/med/trunk/debian-med/tasks/physics&p2=projects/med/trunk/debian-med/tasks/physics ============================================================================== --- projects/med/trunk/debian-med/tasks/physics (original) +++ projects/med/trunk/debian-med/tasks/physics Fri Jun 25 05:52:10 2010 @@ -70,7 +70,7 @@ Published-Year: 2008 Published-URL: http://hci.tugraz.at/~schloegl/publications/Schloegl2007_BCI_Software.pdf Published-DOI: 10.3389/neuro.11.003.2009 -Institution: Institute for Human-Computer Interfaces, University of Technology Graz +X-Institution: Institute for Human-Computer Interfaces, University of Technology Graz Depends: gate Homepage: http://www.opengatecollaboration.org _______________________________________________ Blends-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/blends-commit
