Author: tille Date: Mon Jun 28 07:41:10 2010 New Revision: 2240 URL: http://svn.debian.org/viewsvn/blends?rev=2240&view=rev
Log: Added denoiser as prospective package Modified: projects/med/trunk/debian-med/tasks/bio Modified: projects/med/trunk/debian-med/tasks/bio URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2240&view=diff&r1=2240&r2=2239&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio ============================================================================== --- projects/med/trunk/debian-med/tasks/bio (original) +++ projects/med/trunk/debian-med/tasks/bio Mon Jun 28 07:41:10 2010 @@ -3296,6 +3296,22 @@ capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. +Depends: denoiser +WNPP: 587274 +Homepage: http://www.microbio.me/denoiser/ +License: GPL +Language: Haskell +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/denoiser/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/denoiser/trunk/ +Responsible: Steffen Moeller <[email protected]> +Pkg-Description: Rapid denoising of pyrosequencing amplicon data + To denoise pyrosequencing amplicon data, the package exploits the + rank-abundance distribution. PyroNoise uses an expectation maximization + (EM) algorithm to figure out the most likely sequence for every read. We, + instead, use a greedy scheme that can be seen as an approximation to + PyroNoise. According to several test data sets, the approximation gives + very similar results in a fraction of the time. + Comment: Several related R packages are listed at CRAN: http://cran.r-project.org/web/views/Genetics.html _______________________________________________ Blends-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/blends-commit
