Author: tille Date: Mon Aug 2 08:30:16 2010 New Revision: 2299 URL: http://svn.debian.org/viewsvn/blends?rev=2299&view=rev
Log: Removed extra information from now official package python-pynast Modified: projects/med/trunk/debian-med/tasks/bio Modified: projects/med/trunk/debian-med/tasks/bio URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2299&view=diff&r1=2299&r2=2298&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio ============================================================================== --- projects/med/trunk/debian-med/tasks/bio (original) +++ projects/med/trunk/debian-med/tasks/bio Mon Aug 2 08:30:16 2010 @@ -407,6 +407,12 @@ Published-Year: 2006 Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/16332707 +Depends: python-pynast +Published-Title: PyNAST: a flexible tool for aligning sequences to a template alignment +Published-Authors: J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman, Todd Z. DeSantis, Gary L. Andersen, and Rob Knight +Published-In: Bioinformatics 26: 266-267 +Published-Year: 2010 +Published-DOI: 10.1093/bioinformatics/btp636 Depends: raxml Homepage: http://icwww.epfl.ch/~stamatak/index-Dateien/Page443.htm @@ -3207,38 +3213,6 @@ PyCogent toolkit. It makes extensive use of unit tests, and is highly modular to facilitate custom analyses. -Depends: python-pynast -WNPP: 587189 -Homepage: http://pynast.sf.net -License: GPL -Language: Python -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-nast/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-nast/trunk/ -Responsible: Steffen Moeller <[email protected]> -Pkg-Description: alignment of short DNA sequences - The package provices a reimplementation of the Nearest Alignment - Space Termination tool in python. It was prepared for next generation - sequencers. - . - Given a set of sequences and a template alignment, PyNAST will align the - input sequences against the template alignment, and return a multiple - sequence alignment which contains the same number of positions (or - columns) as the template alignment. This facilitates the analysis of new - sequences in the context of existing alignments, and additional data - derived from existing alignments such as phylogenetic trees. Because - any protein or nucleic acid sequences and template alignments can be - provided, PyNAST is not limited to the analysis of 16s rDNA sequences. - . - Since version 1.1, PyNAST no longer exactly matches the output - of the origianl NAST program. Instead it focuses on getting better - alignments. Users who wish to exactly match the results of NAST should - download PyNAST 1.0. -Published-Title: PyNAST: a flexible tool for aligning sequences to a template alignment -Published-Authors: J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman, Todd Z. DeSantis, Gary L. Andersen, and Rob Knight -Published-In: Bioinformatics 26: 266-267 -Published-Year: 2010 -Published-DOI: 10.1093/bioinformatics/btp636 - Depends: denoiser WNPP: 587274 Homepage: http://www.microbio.me/denoiser/ _______________________________________________ Blends-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/blends-commit
