Author: tille Date: Wed Aug 4 11:26:29 2010 New Revision: 2316 URL: http://svn.debian.org/viewsvn/blends?rev=2316&view=rev
Log: Added debian/control to svn to have a recored what control file was finally released, polished config/control, release to enable smooth vtk migration Added: projects/med/trunk/debian-med/debian/control Modified: projects/med/trunk/debian-med/config/control projects/med/trunk/debian-med/debian/changelog Modified: projects/med/trunk/debian-med/config/control URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/config/control?rev=2316&view=diff&r1=2316&r2=2315&p1=projects/med/trunk/debian-med/config/control&p2=projects/med/trunk/debian-med/config/control ============================================================================== --- projects/med/trunk/debian-med/config/control (original) +++ projects/med/trunk/debian-med/config/control Wed Aug 4 11:26:29 2010 @@ -16,13 +16,14 @@ . * med-bio for biological research * med-bio-dev for developing applications in biological research - * med-cms for publicating a medical site on the internet * med-epi for epidemiology * med-imaging for image processing * med-imaging-dev for developing applications for image processing * med-pharmacy for pharmaceutical research * med-physics for radiation oncology, diagnostic imaging, related fields * med-practice for general practitioners + * med-psychology for psychology + * med-statistics miscellaneous tools medical for statistics * med-tools contains miscellaneous tools * med-typesetting depends from useful tools for typesetting . Modified: projects/med/trunk/debian-med/debian/changelog URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=2316&view=diff&r1=2316&r2=2315&p1=projects/med/trunk/debian-med/debian/changelog&p2=projects/med/trunk/debian-med/debian/changelog ============================================================================== --- projects/med/trunk/debian-med/debian/changelog (original) +++ projects/med/trunk/debian-med/debian/changelog Wed Aug 4 11:26:29 2010 @@ -1,10 +1,17 @@ -debian-med (1.7) UNRELEASED; urgency=low +debian-med (1.7) unstable; urgency=low * Rebuild against blends-dev >= 0.6.14 to prevent accessint internet at package build time * Standards-Version: 3.9.1 (no changes needed) + * tasks/imaging-dev: Revcent version of vtk to make + sure vtk migration will be not blocked by Debian Med + * config/control: + - Do not mention mention med-cms any more because the package + will not be created any more. The only dependency in Debian + zope-zms was removed. + - Add med-psychology and med-statistics - -- Andreas Tille <[email protected]> Tue, 03 Aug 2010 10:33:17 +0200 + -- Andreas Tille <[email protected]> Wed, 04 Aug 2010 12:43:09 +0200 debian-med (1.6) unstable; urgency=low Added: projects/med/trunk/debian-med/debian/control ============================================================================== --- (empty file) +++ projects/med/trunk/debian-med/debian/control Wed Aug 4 11:26:29 2010 @@ -0,0 +1,183 @@ +# This file is autogenerated via make -f debian/rules dist. Do not edit! +Source: debian-med +Section: misc +Priority: extra +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends-Indep: blends-dev (>= 0.6.14) +Standards-Version: 3.9.1 +Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/blends/projects/med/trunk/debian-med/ + +Package: med-tasks +Architecture: all +Depends: tasksel +Description: Debian Med tasks for tasksel + This package provides Debian Med tasks in tasksel. + . + These tasks are described in detail at + http://debian-med.alioth.debian.org/tasks/ + +Package: med-config +Architecture: all +Depends: adduser, ${misc:Depends}, menu, blends-common (>= 0.6.12) +Conflicts: med-common +Replaces: med-common +Provides: med-common +Description: Debian Med Project config package + This package provides the basic infrastructure of all med-* packages and is + needed by them. + . + This package provides some files which are common to all med-* packages. + Moreover it introduces a method to handle system users in a group + med using debconf. + . + Other packages in Debian Med Project are: + . + * med-bio for biological research + * med-bio-dev for developing applications in biological research + * med-epi for epidemiology + * med-imaging for image processing + * med-imaging-dev for developing applications for image processing + * med-pharmacy for pharmaceutical research + * med-physics for radiation oncology, diagnostic imaging, related fields + * med-practice for general practitioners + * med-psychology for psychology + * med-statistics miscellaneous tools medical for statistics + * med-tools contains miscellaneous tools + * med-typesetting depends from useful tools for typesetting + . + Note: All these packages are so called metapackages. This means they are not + executable programs, but only links to other packages. This way you will + conveniently get all the non-commercial medical software which is available + for Debian GNU/Linux. + + +Package: med-bio +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: adun.app, alien-hunter, altree, amap-align, autodock, ballview, blast2, boxshade, bwa, dialign, dialign-tx, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, gamgi, garlic, gdpc, gff2aplot, gff2ps, ghemical, glam2, gromacs, hmmer, infernal, kalign, last-align, loki, mafft, maq, massxpert, melting, mipe, mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, ncoils, njplot, perlprimer, phyml, picard-tools, plasmidomics, plink, poa, primer3, probcons, proda, pymol, r-bioc-hilbertvis, r-cran-qtl, r-other-bio3d, r-other-mott-happy, rasmol, readseq, rnahybrid, samtools, sibsim4, sigma-align, sim4, ssake, staden-io-lib-utils, t-coffee, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, treeviewx, velvet, wise +Suggests: acedb-other, acedb-other-belvu, acedb-other-dotter, act, agdbnet, amos-assembler, amoscmp, arb, artemis, asap, autodocktools, axparafit, axpcoords, bambus, beast-mcmc, big-blast, bio-mauve, blixem, bowtie, btk-core, cactus, caftools, cap3, cd-hit, cdna-db, clustalw, clustalw-mpi, clustalx, cluster3, coalesce, codonw, compclust, contralign, coot, copycat, crossbow, cytoscape, das-proserver, dazzle, decipher, denoiser, dotter, dotur, ecell, elph, embassy-phylip, emboss-explorer, emboss-kaptain, est-db, estferret, estscan, exalt, excavator, fasta, fastx-toolkit, figaro, finex, fluctuate, forester, galaxy, gbioseq, gbrowse, genesplicer, genetrack, genezilla, genographer, gentle, glimmerhmm, gmap, gmv, grogui, haploview, hawkeye, hexamer, igv, jalview, jigsaw, jmol, jstreeview, jtreeview, kempbasu, lagan, lamarc, logomat-m, lucy, mage2tab, martj, mauvealigner, maxd, melting-gui, meme, mesquite, migrate, minimus, mira, mirbase, molekel, molphy, mothur, mozilla-biofox, mrbayes, msatfinder, mummergpu, murasaki, mview, ncbi-tools++, ngila, obo-edit, oligoarrayaux, omegamap, operondb, paml, partigene, patman, pdb2pqr, pfaat, pftools, phagefinder, phpphylotree, phylip, phylographer, phylowin, populations, prank, proalign, profit, prot4est, pyrophosphate-tools, python-cogent, python-pynast, qiime, qtlcart, r-ape, r-other-genabel, r-other-valdar-bagphenotype.library, raster3d, raxml, rbs-finder, recombine, repeatfinder, reputer, roche454ace2caf, rose, rosetta, seaview, seq-gen, seqan-apps, sequenceconverter.app, smile, spice, splitstree, ssaha, tacg, taverna, taxinspector, tetra, tigr-assembler, tm-align, trace2dbest, tracetuner, transtermhp, treebuilder3d, treeplot, treetime, treevolve, trnascan-se, twain, uniprime, vienna-rna, wgs-assembler +Description: Debian Med micro-biology packages + This metapackage will install Debian packages related to molecular biology, + structural biology and bioinformatics for use in life sciences. + +Package: med-bio-dev +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: bioperl, bioperl-run, biosquid, libace-perl, libajax6-dev, libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl, libbio-primerdesigner-perl, libbio-ruby, libbiojava-java, libgenome-1.3-0-dev, libgo-perl, libncbi6-dev, libnucleus6-dev, libqsearch-dev, libsrf-dev, libstaden-read-dev, libtfbs-perl, libvibrant6-dev, mcl, octave-bioinfo, python-biopython, r-cran-genetics, r-cran-haplo.stats, seqan-dev +Suggests: bioclipse, bioconductor, libajax5-dev, libbio-das-perl, libbiococoa-dev, libgff-perl, libmems-1.5-1, libnucleus5-dev, libsbml1, limma, r-cran-rocr +Description: Debian Med packages for development of micro-biology applications + This metapackage will install Debian packages which might be helpful + for development of applications for micro-biological research. + +Package: med-data +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: freediams +Suggests: drugref.org +Description: Debian Med suggestions for medical databases + Currently Debian Med does not yet contain any medical data like drug + databases. We just provide a list of Free Software that might be used + and which might be included into Debian at a later point in time + provided somebody is willing to take over the packaging work. + +Package: med-epi +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: epigrass, r-cran-diagnosismed, r-cran-epi, r-cran-epibasix, r-cran-epicalc, r-cran-epir, r-cran-epitools +Suggests: netepi-analysis, netepi-collection, r-cran-msm, r-cran-surveillance, repast, swarm +Description: Debian Med epidemiology related packages + This metapackage will install tools that are useful in epidemiological + research. Several packages making use of the GNU R data language for + statistical investigation. It might be a good idea to read the paper + "A short introduction to R for Epidemiology" at + http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf + +Package: med-imaging +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: aeskulap, amide, ants, caret, ctn, ctsim, dcmtk, dicom3tools, dicomnifti, dicomscope, fslview, gwyddion, imagej, itksnap, libgdcm-tools, lipsia, medcon, minc-tools, mrtrix, nifti-bin, odin, openmeeg-tools, pixelmed-java, python-mvpa, python-nifti, python-nipy, python-nipype, slicer, sofa-apps, via-bin, voxbo, xmedcon +Suggests: afni, bioimagesuite, blox, brainvisa, cdmedicpacs, connectomeviewer, conquest-dicom-server, dcm4che, devide, dicom4j, drjekyll, ecg2png, fiji, fsl, gofigure2, imagemagick, imview, invesalius, jemris, jist, kradview, libvista2, loci-bio-formats, maris, mesa-test-tools, micromanager, mipav, mni-autoreg, mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mricron, mrisim, opendicom.net, openelectrophy, opensourcepacs, piano, pngquant, sigviewer, stir, visit, vmtk +Description: Cross-platform for visualizing, processing and analysing of bioimages + GoFigure2 is an open-source, cross-platform application for + visualizing, processing and analyzing of multidimensional microscopy + data. Users can visualize, segment and track cells through time, + detect cell-division and ultimately generate lineages. + +Package: med-imaging-dev +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: cimg-dev, ctn-dev, gmic, libcv-dev, libgdcm2-dev, libgiftiio-dev, libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libopenmeeg-dev, libteem1-dev, libvia-dev, libvolpack1-dev, libvxl1-dev, odin, python-dicom, python-gdcm, python-mvpa, python-nipy, python-nipype +Suggests: igstk-examples, insighttoolkit3-examples, libbiosig4c++-dev, libigstk4-dev, libmni-perllib-perl, libnifti-dev, libnifti-doc, libvista2-dev, libvtk5.4, python-libavg +Description: Debian Med packages for medical image development + This metapackage will install Debian packages which might be useful + for developing applications for medical image processing. + +Package: med-pharmacy +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: chemtool +Description: Debian Med packages for pharmaceutical research + This metapackage contains dependencies for a + collection of software and documentation which is useful for + pharmaceutical research. + +Package: med-physics +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: octave3.2, paw, paw++, r-base +Suggests: biosig, gate, openvibe, paw-demos +Description: Debian Med packages for medical physicists + This metapackage contains dependencies for a + collection of software and documentation which is useful for + medical physicists in radiation oncology, diagnostics imaging + and related fields. + +Package: med-practice +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: aeskulap, freediams, gnumed-client, gnumed-server, libchipcard-tools, r-cran-medadherence +Suggests: clearhealth, elementalclinic, elexis, freeb, freemed, libctapimkt0, medintux, mirrormed, mirth, openemr, openpms, openrep, proteus, resmedicinae, sqlclinic, tinyheb +Description: Debian Med packages for practice management + This metapackage contains dependencies for a collection of software + which might be helpful for practitioners to manage their practice. + +Package: med-psychology +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: praat, psignifit, psychopy, python-pyepl, r-cran-foreign, r-cran-psy +Suggests: miscpsycho, psignifit3, psych, psychometric, psychotree, psyphy, visionegg +Description: Debian Med packages for psychology + This metapackage contains dependencies for a collection of software + which might be helpful for psychological research. + +Package: med-statistics +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: r-cran-qvalue, r-cran-randomforest +Suggests: science-statistics +Description: Debian Med statistics + This metapackage will install packages which are helpful to do statistics + with a special focus on tasks in medical care. + +Package: med-tools +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: cycle, hunspell-de-med, mencal, pondus, quitcount, wgerman-medical, workrave +Suggests: cl-pubmed, hunspell-en-med, linuxorg-pcal, mssstest, python-clips +Description: Debian Med several tools + This metapackage will install tools for several purposes in health care. + Currently it contains some simple programs for Personal Health. + +Package: med-typesetting +Architecture: all +Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Recommends: texlive-latex-extra, texlive-science +Suggests: bibus, kbibtex +Description: Debian Med support for typesetting and publishing + This metapackage will install Debian packages that might be helpful + for typesetting and publishing in medical care and structural + biology. + _______________________________________________ Blends-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/blends-commit
