Author: plessy Date: Sun Aug 8 23:39:40 2010 New Revision: 2329 URL: http://svn.debian.org/viewsvn/blends?rev=2329&view=rev
Log: A cloud task for Debian Med. See the following discussions: - http://lists.debian.org/[email protected] - http://lists.debian.org/[email protected] Added: projects/med/trunk/debian-med/tasks/cloud Added: projects/med/trunk/debian-med/tasks/cloud ============================================================================== --- (empty file) +++ projects/med/trunk/debian-med/tasks/cloud Sun Aug 8 23:39:40 2010 @@ -0,0 +1,107 @@ +Task: Cloud +Description: Cloud computing image for Debian Med. + This metapackage will install Debian packages related to molecular biology, + structural biology and bioinformatics for use in life sciences, that do not + depend on graphical toolkits and therefore can fit on system images for use + in cloud computing clusters, where space can be limited. + +X-Begin-Category: Phylogenetic analysis +Depends: + altree, + fastdnaml, + phyml, + tree-puzzle | tree-ppuzzle +X-End-Category: Phylogenetic analysis + +X-Begin-Category: Genetics +Depends: + alien-hunter, + bagphenotype, + fastlink, + loki, + plink, + r-other-valdar-bagphenotype.library + r-cran-qtl, + r-other-mott-happy +X-End-Category: Genetics + +X-Begin-Category: Sequence alignments and related programs. +Depends: + amap-align, + blast2 + boxshade, + dialign, + dialign-tx, + exonerate, + gff2aplot, + glam2, + gmap, + hmmer, + kalign, + mafft, + mummer, + muscle, + poa, + probcons, + proda, + python-pynast, + sibsim4, + sigma-align, + sim4, + t-coffee, + wise +Depends: clustalw | clustalw-mpi +Comment: non-free +X-End-Category: Sequence alignments and related programs. + +X-Begin-Category: EMBOSS +Depends: + emboss, + embassy-domalign, + embassy-domainatrix, + embassy-domsearch, + embassy-phylip +X-End-Category: EMBOSS + +X-Begin-Category: High throughput sequencing +Depends: + bwa, + last-align, + maq, + picard-tools, + r-bioc-hilbertvis, + samtools, + ssake, + velvet +X-End-Category: High throughput sequencing + +X-Begin-Category: Analysis of RNA sequences. +Depends: + infernal, + rnahybrid +X-End-Category: Analysis of RNA sequences. + +X-Begin-Category: Molecular modelling and molecular dynamics +Depends: + gromacs, + mustang, + theseus +Depends: autodock, raster3d +Comment: non-free +X-End-Category: Molecular modelling and molecular dynamics + +X-Begin-Category: Tools for the molecular biologist. +Depends: + acedb-other, + melting, mipe, + ncbi-epcr, + ncbi-tools-bin, + ncoils, + primer3, + readseq, + tigr-glimmer, + seqan-apps, + staden-io-libs-utils +Depends: python-cogent +Comment: non-free +X-End-Category: Tools for the molecular biologist. _______________________________________________ Blends-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/blends-commit
