Author: tille
Date: Thu May 24 07:38:17 2012
New Revision: 3351
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3351
Log:
Strip now redundant information about pal2nal
Modified:
projects/med/trunk/debian-med/tasks/bio
Modified: projects/med/trunk/debian-med/tasks/bio
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3351&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu May 24 07:38:17 2012
@@ -338,6 +338,8 @@
The upload of the package is somehow blocked because the last binary
Jar which is included inside the source (mtj.jar) is quite hard to
package.
+
+Depends: pal2nal
X-Mark: The information below needs to be checked whether it can be obtained
from Vcs or needs to stay here
@@ -2687,28 +2689,6 @@
curves. It provides a GUI for the Debian packaged r-bioc-hilbertvis and is
thus
interesting for giving users some comfort. Until this software is not yet
packaged
you can follow the hint at the homepage how to use it with R.
-
-Depends: pal2nal
-WNPP: 604701
-Responsible: Steffen Moeller <[email protected]>
-Homepage: http://www.bork.embl.de/pal2nal/
-License: to be clarified
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/pal2nal/trunk/
-Pkg-Description: converts proteins to genomic DNA alignment
- PAL2NAL is a program that converts a multiple sequence alignment
- of proteins and the corresponding DNA (or mRNA) sequences into
- a codon-based DNA alignment. The program automatically assigns
- the corresponding codon sequence even if the input DNA sequence
- has mismatches with the input protein sequence, or contains UTRs,
- polyA tails. It can also deal with frame shifts in the input
- alignment, which is suitable for the analysis of pseudogenes.
- The resulting codon-based DNA alignment can further be subjected
- to the calculation of synonymous (Ks) and non-synonymous (Ka)
- substitution rates.
-Published-Title: PAL2NAL: robust conversion of protein sequence alignment into
the corresponding codon alignments.
-Published-Authors: Mikita Suyama, David Torrents, and Peer Bork
-Published-In: Nucleic Acids Res. 34:W609-W612
-Published-Year: 2006
Depends: sra-sdk
Homepage:
http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software
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