Author: tille
Date: Sat Jun 23 12:59:14 2012
New Revision: 3438
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3438
Log:
Inject more "real" control files, for older versions we need to fake these
because the build process went differently and the control file was not part of
the source
Added:
projects/med/tags/0.8.9/debian/control
projects/med/tags/1.6/debian/control
Added: projects/med/tags/0.8.9/debian/control
URL:
http://svn.debian.org/wsvn/blends/projects/med/tags/0.8.9/debian/control?rev=3438&op=file
==============================================================================
--- projects/med/tags/0.8.9/debian/control (added)
+++ projects/med/tags/0.8.9/debian/control Sat Jun 23 12:59:14 2012
@@ -1,0 +1,89 @@
+Source: debian-med
+Section: misc
+Priority: extra
+Maintainer: Andreas Tille <[email protected]>
+Build-Depends-Indep: debhelper (>= 4), cdd-dev (>= 0.3.9)
+Standards-Version: 3.6.1
+
+Package: med-common
+Architecture: all
+Depends: adduser, debconf (>= 1.2), menu (>= 2.1.14), cdd-common (>= 0.3.9)
+Description: Debian-Med Project common package
+ This package builds the basic infra structure of all med-* packages.
+ .
+ This package provides some files which are common to all med-* packages.
+ Moreover it introduces a method to handle system users in a group
+ med (easily adaptable to junior by setting view variables) using
+ debconf. This could be valuable for other internal projects.
+
+Package: med-bio
+Architecture: all
+Depends: med-common (= 0.8.9), blast2, boxshade, bugsx, fastdnaml, fastlink,
garlic, ghemical, hmmer, loki, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11,
njplot, pymol, r-cran-qtl, rasmol, readseq, tigr-glimmer, tree-puzzle
+Suggests: clustalw, clustalw-mpi, clustalx, molphy, phylip, seaview, treetool
+Description: Debian-Med micro-biology packages
+ This meta package will install micro-biology related Debian packages
+ for use in medical research.
+
+Package: med-bio-dev
+Architecture: all
+Depends: med-common (= 0.8.9), bioperl, libncbi6-dev, libvibrant6-dev, mcl
+Suggests: biomode, r-base
+Description: Debian-Med packages for development of micro-biology applications
+ This meta package will install Debian packages which might be helpful
+ for development of applications for micro-biological research.
+
+Package: med-cms
+Architecture: all
+Depends: med-common (= 0.8.9), zope-zms
+Description: Debian-Med content management systems
+ This meta package will install packages which are useful to build a
+ content management system for medical care.
+
+Package: med-dent
+Architecture: all
+Depends: med-common (= 0.8.9), debconf (>= 1.2), debianutils (>= 2.6.2),
mozilla-browser | www-browser
+Description: Debian-Med package for dental practice client
+ This meta package will configure your system to act as client for the
+ OdontoLinux server which provides a system for managing a dental practice.
+
+Package: med-imaging
+Architecture: all
+Depends: med-common (= 0.8.9), ctn, ctsim, medcon, minc-tools, paul, xmedcon
+Suggests: imagemagick
+Description: Debian-Med imaging packages
+ This meta package will install Debian packages which might be useful in
medical
+ image processing.
+
+Package: med-imaging-dev
+Architecture: all
+Depends: med-common (= 0.8.9), ctn-dev, libgtkimreg-dev, libmdc2-dev,
libminc0-dev
+Description: Debian-Med packages for medical image development
+ This meta package will install Debian packages which might be useful
+ for developing applications for medical image processing.
+
+Package: med-pharmacy
+Architecture: all
+Depends: med-common (= 0.8.9), chemtool
+Description: Debian-Med packages for pharmaceutical research
+ This meta package contains dependencies for a
+ collection of software and documentation which is useful for
+ pharmaceutical research.
+
+Package: med-physics
+Architecture: all
+Depends: med-common (= 0.8.9), octave, paw++, r-base
+Suggests: paw-demos
+Recommends: paw
+Description: Debian-Med packages for medical physicists
+ This meta package contains dependencies for a
+ collection of software and documentation which is useful for
+ medical physicists in radiation oncology, diagnostics imaging
+ and related fields.
+
+Package: med-tools
+Architecture: all
+Depends: med-common (= 0.8.9), mencal
+Description: Debian-Med several tools
+ This meta package will install tools for several purposes in health care.
+ Currently it just depends from mencal.
+
Added: projects/med/tags/1.6/debian/control
URL:
http://svn.debian.org/wsvn/blends/projects/med/tags/1.6/debian/control?rev=3438&op=file
==============================================================================
--- projects/med/tags/1.6/debian/control (added)
+++ projects/med/tags/1.6/debian/control Sat Jun 23 12:59:14 2012
@@ -1,0 +1,184 @@
+# This file is autogenerated via make -f debian/rules dist. Do not edit!
+Source: debian-med
+Section: misc
+Priority: extra
+Maintainer: Debian Med Packaging Team
<[email protected]>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <[email protected]>
+Build-Depends-Indep: blends-dev (>= 0.6.12)
+Standards-Version: 3.8.4
+Vcs-Browser:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/blends/projects/med/trunk/debian-med/
+
+Package: med-tasks
+Architecture: all
+Depends: tasksel
+Description: Debian Med tasks for tasksel
+ This package provides Debian Med tasks in tasksel.
+ .
+ These tasks are described in detail at
+ http://debian-med.alioth.debian.org/tasks/
+
+Package: med-config
+Architecture: all
+Depends: adduser, ${misc:Depends}, menu, blends-common (>= 0.6.12)
+Conflicts: med-common
+Replaces: med-common
+Provides: med-common
+Description: Debian Med Project config package
+ This package provides the basic infrastructure of all med-* packages and is
+ needed by them.
+ .
+ This package provides some files which are common to all med-* packages.
+ Moreover it introduces a method to handle system users in a group
+ med using debconf.
+ .
+ Other packages in Debian Med Project are:
+ .
+ * med-bio for biological research
+ * med-bio-dev for developing applications in biological research
+ * med-cms for publicating a medical site on the internet
+ * med-epi for epidemiology
+ * med-imaging for image processing
+ * med-imaging-dev for developing applications for image processing
+ * med-pharmacy for pharmaceutical research
+ * med-physics for radiation oncology, diagnostic imaging, related fields
+ * med-practice for general practitioners
+ * med-tools contains miscellaneous tools
+ * med-typesetting depends from useful tools for typesetting
+ .
+ Note: All these packages are so called metapackages. This means they are not
+ executable programs, but only links to other packages. This way you will
+ conveniently get all the non-commercial medical software which is available
+ for Debian GNU/Linux.
+
+
+Package: med-bio
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: adun.app, alien-hunter, altree, amap-align, autodock, ballview,
blast2, boxshade, bwa, dialign, dialign-tx, embassy-domainatrix,
embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink,
gamgi, garlic, gdpc, gff2aplot, gff2ps, ghemical, glam2, gromacs, hmmer,
infernal, kalign, last-align, loki, mafft, maq, massxpert, melting, mipe,
mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, njplot,
perlprimer, phyml, plasmidomics, plink, poa, primer3, probcons, proda, pymol,
r-bioc-hilbertvis, r-cran-qtl, r-other-bio3d, r-other-mott-happy, rasmol,
readseq, rnahybrid, samtools, seaview, sibsim4, sigma-align, sim4, ssake,
staden-io-lib-utils, t-coffee, theseus, tigr-glimmer, tree-puzzle |
tree-ppuzzle, treeviewx, velvet, wise
+Suggests: acedb-other, acedb-other-belvu, acedb-other-dotter, act, agdbnet,
amos-assembler, amoscmp, arb, artemis, asap, autodocktools, axparafit,
axpcoords, bambus, beast-mcmc, big-blast, bio-mauve, blixem, bowtie, btk-core,
cactus, caftools, cap3, cd-hit, cdna-db, clustalw, clustalw-mpi, clustalx,
cluster3, coalesce, codonw, compclust, contralign, coot, copycat, crossbow,
cytoscape, das-proserver, dazzle, decipher, dotter, dotur, ecell, elph,
embassy-phylip, emboss-explorer, emboss-kaptain, est-db, estferret, estscan,
exalt, excavator, fasta, fastx-toolkit, figaro, finex, fluctuate, forester,
galaxy, gbioseq, gbrowse, genesplicer, genetrack, genezilla, genographer,
glimmerhmm, gmv, grogui, haploview, hawkeye, hexamer, jalview, jigsaw, jmol,
jstreeview, jtreeview, kempbasu, lagan, lamarc, logomat-m, lucy, mage2tab,
martj, mauvealigner, maxd, melting-gui, meme, mesquite, migrate, minimus, mira,
mirbase, molekel, molphy, mozilla-biofox, mrbayes, msatfinder, mummergpu,
murasaki, mview, ncbi-tools++, ncoils, ngila, obo-edit, oligoarrayaux,
omegamap, operondb, paml, partigene, patman, pdb2pqr, pfaat, pftools,
phagefinder, phpphylotree, phylip, phylographer, phylowin, populations, prank,
proalign, profit, prot4est, pyrophosphate-tools, qtlcart, r-ape,
r-other-genabel, raster3d, raxml, rbs-finder, recombine, repeatfinder, reputer,
roche454ace2caf, rose, rosetta, seq-gen, seqan-apps, sequenceconverter.app,
smile, spice, splitstree, ssaha, tacg, taverna, taxinspector, tetra,
tigr-assembler, tm-align, trace2dbest, tracetuner, transtermhp, treebuilder3d,
treeplot, treevolve, trnascan-se, twain, uniprime, vienna-rna, wgs-assembler
+Description: Debian Med micro-biology packages
+ This metapackage will install Debian packages related to molecular biology,
+ structural biology and bioinformatics for use in life sciences.
+
+Package: med-bio-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: bioperl, bioperl-run, biosquid, libace-perl, libajax6-dev,
libbio-graphics-perl, libbio-mage-perl, libbio-primerdesigner-perl,
libbio-ruby, libbiojava-java, libgenome-1.3-0-dev, libgo-perl, libncbi6-dev,
libnucleus6-dev, libqsearch-dev, libsrf-dev, libstaden-read-dev, libtfbs-perl,
libvibrant6-dev, mcl, octave-bioinfo, python-biopython, r-cran-genetics,
r-cran-haplo.stats, seqan-dev
+Suggests: bioclipse, bioconductor, libajax5-dev, libbio-das-perl,
libbio-mage-utils-perl, libbiococoa-dev, libgff-perl, libmems-1.5-1,
libnucleus5-dev, libsbml1, limma, r-cran-rocr
+Description: Debian Med packages for development of micro-biology applications
+ This metapackage will install Debian packages which might be helpful
+ for development of applications for micro-biological research.
+
+Package: med-epi
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: epigrass, r-cran-diagnosismed, r-cran-epi, r-cran-epibasix,
r-cran-epicalc, r-cran-epir, r-cran-epitools
+Suggests: netepi-analysis, netepi-collection, r-cran-msm, r-cran-surveillance
+Description: Debian Med epidemiology related packages
+ This metapackage will install tools that are useful in epidemiological
+ research. Several packages making use of the GNU R data language for
+ statistical investigation. It might be a good idea to read the paper
+ "A short introduction to R for Epidemiology" at
+ http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
+
+Package: med-imaging
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: aeskulap, amide, ctn, ctsim, dcmtk, dicom3tools, dicomnifti,
dicomscope, fslview, gwyddion, imagej, libgdcm-tools, lipsia, medcon,
minc-tools, nifti-bin, odin, pixelmed-java, python-mvpa, python-nifti,
python-nipy, python-nipype, slicer, sofa-apps, via-bin, xmedcon
+Suggests: afni, bioimagesuite, blox, brainvisa, caret, cdmedicpacs,
conquest-dicom-server, dcm4che, devide, dicom4j, drjekyll, ecg2png, fiji, fsl,
imagemagick, imview, invesalius, kradview, libvista2, loci-bio-formats, maris,
mesa-test-tools, micromanager, mni-autoreg, mni-n3, mrisim, opendicom.net,
openelectrophy, opensourcepacs, piano, pixelmed, pngquant, stir, visit
+Description: Debian Med imaging packages
+ This metapackage will install Debian packages which might be useful in
+ medical image processing.
+ .
+ It installs several packages supporting DICOM (Digital Imaging and
+ Communications in Medicine) which is the de-facto standard for medical
+ image management. The standard defines data structures and services for
+ the exchange of medical images and related information. The latest release
+ has been published in 2008 and consists of 18 parts.
+ .
+ For more information, you can visit the NEMA homepage
+ http://medical.nema.org/ .
+ .
+ The status of the official DICOM base standard plus all the
+ supplements and correction items are summarized at David Clunie's webpage:
+ http://www.dclunie.com/dicom-status/status.html
+ where you'll find direct links to the most recent yearly edition
+ ftp://medical.nema.org/medical/dicom/2008/ .
+
+Package: med-imaging-dev
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cimg-dev, ctn-dev, libcv-dev, libgdcm2-dev,
libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti1-dev, libteem1-dev,
libvia-dev, libvolpack1-dev, libvxl1-dev, odin, python-mvpa, python-nipy,
python-nipype
+Suggests: gmic, igstk-examples, insighttoolkit3-examples, libigstk3-dev,
libmni-perllib-perl, libnifti-doc, libvista2-dev, libvtk5, python-libavg, rumba
+Description: Debian Med packages for medical image development
+ This metapackage will install Debian packages which might be useful
+ for developing applications for medical image processing.
+
+Package: med-pharmacy
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: chemtool
+Description: Debian Med packages for pharmaceutical research
+ This metapackage contains dependencies for a
+ collection of software and documentation which is useful for
+ pharmaceutical research.
+
+Package: med-physics
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: octave3.2, paw, paw++, r-base | r-base-core
+Suggests: biosig, gate, paw-demos
+Description: Debian Med packages for medical physicists
+ This metapackage contains dependencies for a
+ collection of software and documentation which is useful for
+ medical physicists in radiation oncology, diagnostics imaging
+ and related fields.
+
+Package: med-practice
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: aeskulap, edfbrowser, gnumed-client, gnumed-server,
libchipcard-tools, r-cran-medadherence
+Suggests: clearhealth, elementalclinic, elexis, freeb, freemed, libctapimkt0,
medintux, mirrormed, mirth, openemr, openpms, openrep, proteus, resmedicinae,
sqlclinic, tinyheb
+Description: Debian Med packages for practice management
+ This metapackage contains dependencies for a collection of software
+ which might be helpful for practitioners to manage their practice.
+
+Package: med-psychology
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: praat, psignifit, psychopy, python-pyepl, r-cran-foreign,
r-cran-psy
+Suggests: miscpsycho, psych, psychometric, psychotree, psyphy, visionegg
+Description: Debian Med packages for psychology
+ This metapackage contains dependencies for a collection of software
+ which might be helpful for psychological research.
+
+Package: med-statistics
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: r-cran-qvalue, r-cran-randomforest
+Suggests: science-statistics
+Description: Debian Med statistics
+ This metapackage will install packages which are helpful to do statistics
+ with a special focus on tasks in medical care.
+
+Package: med-tools
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: cycle, edfbrowser, hunspell-de-med, mencal, pondus, quitcount,
wgerman-medical, workrave
+Suggests: cl-pubmed, hunspell-en-med, linuxorg-pcal, mssstest, python-clips
+Description: Debian Med several tools
+ This metapackage will install tools for several purposes in health care.
+ Currently it contains some simple programs for Personal Health.
+
+Package: med-typesetting
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: texlive-latex-extra, texlive-science
+Suggests: bibus, kbibtex
+Description: Debian Med support for typesetting and publishing
+ This metapackage will install Debian packages that might be helpful
+ for typesetting and publishing in medical care and structural
+ biology.
+
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