Author: tille
Date: Tue Nov 27 16:42:34 2012
New Revision: 3670
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3670
Log:
Regenerate debian/control with renamed metapackage
Modified:
projects/med/trunk/debian-med/debian-med-tasks.desc
projects/med/trunk/debian-med/debian/control
Modified: projects/med/trunk/debian-med/debian-med-tasks.desc
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian-med-tasks.desc?rev=3670&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian-med-tasks.desc (original)
+++ projects/med/trunk/debian-med/debian-med-tasks.desc Tue Nov 27 16:42:34 2012
@@ -436,7 +436,7 @@
Packages: list
dicompyler
-Task: med-pharma
+Task: med-pharmacy
Section: debian-med
Description: Debian Med packages for pharmaceutical research
This metapackage contains dependencies for a
@@ -444,7 +444,7 @@
pharmaceutical research.
Relevance: 10
Key:
- med-pharma
+ med-pharmacy
Packages: list
chemtool
Modified: projects/med/trunk/debian-med/debian/control
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=3670&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control (original)
+++ projects/med/trunk/debian-med/debian/control Tue Nov 27 16:42:34 2012
@@ -58,7 +58,7 @@
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: abacas, acedb-other, acedb-other-belvu, acedb-other-dotter,
adun.app, alien-hunter, altree, amap-align, ampliconnoise, autodock,
autodock-vina, autogrid, ballview, bedtools, biomaj, blast2, bowtie, bowtie2,
boxshade, bwa, cd-hit, clonalframe, clustalo, clustalw, clustalx, dialign,
dialign-tx, disulfinder, dotur, dssp, embassy-domainatrix, embassy-domalign,
embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fasttree,
fastx-toolkit, ffindex, figtree, filo, gamgi, garlic, gbrowse, gdpc, gentle,
gff2aplot, gff2ps, ghemical, glam2, grinder, gromacs, hhsuite, hmmer, infernal,
jalview, jellyfish, jmol, kalign, last-align, librg-utils-perl, loki, mafft,
maq, maqview, massxpert, melting, mipe, mira-assembler, mlv-smile, mothur,
mrbayes, mummer, muscle, mustang, ncbi-blast+, ncbi-epcr, ncbi-tools-bin,
ncbi-tools-x11, ncoils, neobio, njplot, perlprimer, phyml, picard-tools,
plasmidomics, plink, poa, populations, primer3, probalign, probcons, proda,
profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md,
profnet-norsnet, profnet-prof, profnet-snapfun, profphd, profphd-net,
profphd-utils, proftmb, pymol, pynast, python-cogent, qiime, r-bioc-cummerbund,
r-bioc-hilbertvis, r-cran-genabel, r-cran-qtl, r-other-bio3d,
r-other-mott-happy, rasmol, raster3d, raxml, readseq, reprof, rnahybrid,
samtools, sibsim4, sigma-align, sim4, squizz, sra-toolkit, ssake,
staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tm-align,
transtermhp, tree-puzzle | tree-ppuzzle, treeviewx, vcftools, velvet, wise
-Suggests: abyss, act, amos-assembler, amoscmp, anfo, apollo, arachne, arb,
artemis, asap, augustus, autodocktools, axparafit, axpcoords, bagphenotype,
bambus, bamtools, beads, beast-mcmc, big-blast, bigsdb, blimps-utils, blixem,
btk-core, cactus, caftools, cain, cap3, cdna-db, cinema, circos, clonalorigin,
clustalw-mpi, cluster3, cmap, coalesce, codonw, compclust, concavity,
conservation-code, contralign, coot, copycat, crossbow, cufflinks, cytoscape,
das-proserver, dazzle, decipher, e-hive, ecell, edtsurf, eigensoft, elph,
embassy-phylip, emboss-explorer, ensembl, est-db, estferret, estscan, exalt,
excavator, fas, fasta, fastqc, figaro, finex, fluctuate, forester, forge,
galaxy, gassst, gbioseq, gbrowse-syn, genemark, genesplicer, genetrack,
genezilla, genographer, genometools, glimmerhmm, gmap, gmv, grogui, haploview,
hawkeye, hexamer, hilbertvisgui, hmmer2, igv, jbrowse, jigsaw, jstreeview,
kempbasu, lagan, lamarc, logol-bin, logomat-m, ltrsift, lucy, mage2tab, maker2,
martj, maude, mauvealigner, maxd, melting-gui, meme, mesquite, metarep,
microbiomeutil, migrate, minimus, mirbase, mobyle, molekel, mosaik-aligner,
mozilla-biofox, mpsqed, msatfinder, mugsy, mummergpu, murasaki, mview,
ncbi-seg, ngila, norsnet, norsp, nw-align, oases, obo-edit, oligoarrayaux,
omegamap, operondb, pal2nal, paml, partigene, patman, patristic, pcma, pdb2pqr,
pfaat, pftools, phagefinder, phpphylotree, phy-spread, phylip, phylographer,
phyloviz-core, phylowin, plato, prank, predictnls, predictprotein, proalign,
profbval, profisis, profit, prot4est, pscan-tfbs, pyrophosphate-tools,
python-orange, python-rdkit, python-reaper, qtlcart, r-ape,
r-other-valdar-bagphenotype.library, raccoon, ray-denovoassembler, rbs-finder,
rdp-classifier, recombine, repeatmasker, rmblast, roche454ace2caf, rose,
rosetta, sap, seaview, seq-gen, seqan-apps, seqtk, sequenceconverter.app, sga,
sift, smalt, snap, snpeff, soapdenovo, spice, splitstree, sra-sdk, ssaha,
strap, tacg, taverna, taxinspector, tetra, tigr-assembler, tigr-glimmer-mg,
tophat, trace2dbest, tracetuner, treebuilder3d, treetime, treeview, tripal,
trnascan-se, twain, ugene, uniprime, vegan, vienna-rna, vmd, wgs-assembler,
x-tandem-pipeline, zalign, zodiac-zeden
+Suggests: abyss, act, amos-assembler, amoscmp, anfo, apollo, arachne, arb,
artemis, asap, augustus, autodocktools, axparafit, axpcoords, bagphenotype,
bambus, bamtools, beads, beast-mcmc, big-blast, bigsdb, blimps-utils, blixem,
btk-core, cactus, caftools, cain, cap3, cdna-db, cinema, circos, clonalorigin,
clustalw-mpi, cluster3, cmap, coalesce, codonw, compclust, concavity,
conservation-code, contralign, coot, copycat, crossbow, cufflinks, cytoscape,
das-proserver, dazzle, decipher, e-hive, ecell, edtsurf, eigensoft, elph,
embassy-phylip, emboss-explorer, ensembl, est-db, estferret, estscan, exalt,
excavator, fas, fasta, fastqc, figaro, finex, fluctuate, forester, forge,
galaxy, gassst, gbioseq, gbrowse-syn, genemark, genesplicer, genetrack,
genezilla, genographer, genometools, glimmerhmm, gmap, gmv, grogui, haploview,
hawkeye, hexamer, hilbertvisgui, hmmer2, igv, jbrowse, jigsaw, jstreeview,
kempbasu, lagan, lamarc, logol-bin, logomat-m, ltrsift, lucy, mage2tab, maker2,
martj, maude, mauvealigner, maxd, melting-gui, meme, mesquite, metarep,
microbiomeutil, migrate, minimus, mirbase, mobyle, molekel, mosaik-aligner,
mozilla-biofox, mpsqed, msatfinder, mugsy, mummergpu, murasaki, mview,
ncbi-seg, ngila, norsnet, norsp, nw-align, oases, obo-edit, oligoarrayaux,
omegamap, operondb, pal2nal, paml, partigene, patman, patristic, pcma, pdb2pqr,
pfaat, pftools, phagefinder, phpphylotree, phy-spread, phylip, phylographer,
phyloviz-core, phylowin, plato, prank, predictnls, predictprotein, proalign,
profbval, profisis, profit, prot4est, pscan-tfbs, psipred, pyrophosphate-tools,
python-orange, python-rdkit, python-reaper, qtlcart, r-ape,
r-other-valdar-bagphenotype.library, raccoon, ray-denovoassembler, rbs-finder,
rdp-classifier, recombine, repeatmasker, rmblast, roche454ace2caf, rose,
rosetta, sap, seaview, seq-gen, seqan-apps, seqtk, sequenceconverter.app, sga,
sift, smalt, snap, snpeff, soapdenovo, spice, splitstree, sra-sdk, ssaha,
strap, tacg, taverna, taxinspector, tetra, tigr-assembler, tigr-glimmer-mg,
tophat, trace2dbest, tracetuner, treebuilder3d, treetime, treeview, tripal,
trnascan-se, twain, ugene, uniprime, vegan, vienna-rna, vmd, wgs-assembler,
x-tandem-pipeline, zalign, zodiac-zeden
Description: Debian Med micro-biology packages
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences.
@@ -67,7 +67,7 @@
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: bioperl, bioperl-run, biosquid, libace-perl, libai-fann-perl,
libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl,
libbio-primerdesigner-perl, libbiococoa-dev, libbiojava-java, libbiojava3-java,
libchado-perl, libffindex0-dev, libgenome-1.3-0-dev, libgo-perl,
libhmsbeagle-dev, libjebl2-java, libncbi6-dev, libpal-java,
librg-blast-parser-perl, librg-reprof-bundle-perl, librostlab-blast-doc,
librostlab-blast0-dev, librostlab-doc, librostlab3-dev, libsort-key-top-perl,
libsrf-dev, libstaden-read-dev, libtfbs-perl, libvibrant6-dev, libzerg-perl,
libzerg0-dev, mcl, python-biopython, python-cogent, r-bioc-biobase,
r-cran-genetics, r-cran-haplo.stats, ruby-bio, seqan-dev
-Suggests: bioclipse, biostrings, iranges, libbamtools-dev, libbio-das-perl,
libforester-java, libgbfp-dev, libgenometools0-dev, libgff-perl, libmems-1.5-1,
libnhgri-blastall-perl, libopenmm4-dev, libqsearch-dev,
librcsb-core-wrapper0-dev, libsbml5-dev, octace-bioinfo, octave-bioinfo, pysam,
python-biom-format, python-librcsb-core-wrapper, python-mmtk,
r-bioc-biocgenerics, r-cran-rocr
+Suggests: bioclipse, biostrings, iranges, libbamtools-dev, libbio-das-perl,
libforester-java, libgbfp-dev, libgenometools0-dev, libgff-perl, libmems-1.5-1,
libnhgri-blastall-perl, libopenmm4-dev, libqsearch-dev,
librcsb-core-wrapper0-dev, libsbml5-dev, libswarm2-dev, octace-bioinfo,
octave-bioinfo, pysam, python-biom-format, python-librcsb-core-wrapper,
python-mmtk, r-bioc-biocgenerics, r-cran-rocr
Description: Debian Med packages for development of micro-biology applications
This metapackage will install Debian packages which might be helpful
for development of applications for micro-biological research.
@@ -106,7 +106,7 @@
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: epigrass, r-cran-diagnosismed, r-cran-epi, r-cran-epibasix,
r-cran-epicalc, r-cran-epir, r-cran-epitools
-Suggests: netepi-analysis, netepi-collection, r-cran-msm, r-cran-surveillance,
repast, swarm
+Suggests: netepi-analysis, netepi-collection, r-cran-msm, r-cran-surveillance,
repast
Description: Debian Med epidemiology related packages
This metapackage will install tools that are useful in epidemiological
research. Several packages making use of the GNU R data language for
@@ -142,7 +142,7 @@
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: cimg-dev, ctn-dev, gmic, libactiviz.net-cil, libbiosig-dev,
libcv-dev, libgdcm2-dev, libgdf-dev, libgiftiio-dev, libigstk4-dev,
libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti-dev,
libopenmeeg-dev, libopenslide-dev, libvia-dev, libvolpack1-dev, libvtk5-dev,
libvxl1-dev, odin, python-cfflib, python-dicom, python-dipy, python-gdcm,
python-mvpa, python-nibabel, python-nipy, python-nipype, python-nitime,
python-pyxnat
-Suggests: emokit, igstk-examples, insighttoolkit3-examples,
libbio-formats-java, libcamitk3-dev, libctkcore0-dev, libeegdev-dev,
libmni-perllib-perl, libnifti-doc, libopenslide-java, libteem1-dev,
libvista2-dev, libvtk5.4, libxdffileio-dev, octave-dicom, python-libavg,
python-openslide
+Suggests: emokit, igstk-examples, insighttoolkit3-examples,
libbio-formats-java, libcamitk3-dev, libctk-dev, libeegdev-dev,
libmni-perllib-perl, libnifti-doc, libopenslide-java, libteem1-dev,
libvista2-dev, libvtk5.4, libxdffileio-dev, octave-dicom, python-casmoothing,
python-libavg, python-openslide
Description: Debian Med packages for medical image development
This metapackage will install Debian packages which might be useful
for developing applications for medical image processing.
@@ -156,7 +156,7 @@
This metapackage will install tools that are useful for radiation
oncology.
-Package: med-pharma
+Package: med-pharmacy
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: chemtool
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