Author: tille
Date: Wed Dec 19 07:32:17 2012
New Revision: 3678
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3678
Log:
There is actual packaging available for pysam but under the name python-pysam
Modified:
projects/med/trunk/debian-med/tasks/bio-dev
Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=3678&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Wed Dec 19 07:32:17 2012
@@ -188,13 +188,7 @@
input sequence, and this data can be stored externally (i.e. on disk) to
further reduce memory requirements.
-Depends: pysam
-Homepage: http://code.google.com/p/pysam/
-Vcs-Git: git://git.debian.org/debian-med/pysam.git
-Vcs-Browser: http://git.debian.org/?p=debian-med/pysam.git
-Pkg-Description: interface for the SAM/BAM sequence alignment and mapping
format
- Pysam is a python module for reading and manipulating Samfiles. It's a
- lightweight wrapper of the samtools C-API.
+Depends: python-pysam
Remark: Given the large amount of code duplication (samtools, tabix), this
package
may be difficult to accept for Debian. It is nevertheless listed here as it
is a
useable draft, hoping it may be useful to others.
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