Author: tille
Date: Thu Dec 20 08:31:11 2012
New Revision: 3681
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3681
Log:
* Build-Depends: blends-dev (>= 0.6.16.2)
* Added dependency in imaging-dev: libopenigtlink1-dev
Modified:
projects/med/trunk/debian-med/debian-med-tasks.desc
projects/med/trunk/debian-med/debian/changelog
projects/med/trunk/debian-med/debian/control
projects/med/trunk/debian-med/debian/control.stub
Modified: projects/med/trunk/debian-med/debian-med-tasks.desc
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian-med-tasks.desc?rev=3681&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian-med-tasks.desc (original)
+++ projects/med/trunk/debian-med/debian-med-tasks.desc Thu Dec 20 08:31:11 2012
@@ -415,6 +415,7 @@
gmic
libgiftiio-dev
libactiviz.net-cil
+ libopenigtlink1-dev
python-dicom
libopenmeeg-dev
python-nibabel
Modified: projects/med/trunk/debian-med/debian/changelog
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=3681&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog (original)
+++ projects/med/trunk/debian-med/debian/changelog Thu Dec 20 08:31:11 2012
@@ -1,3 +1,10 @@
+debian-med (1.13.2) unstable; urgency=low
+
+ * Build-Depends: blends-dev (>= 0.6.16.2)
+ * Added dependency in imaging-dev: libopenigtlink1-dev
+
+ -- Andreas Tille <[email protected]> Thu, 20 Dec 2012 09:13:33 +0100
+
debian-med (1.13.1) unstable; urgency=low
* Revert name change from med-pharmacy -> med-pharma
Modified: projects/med/trunk/debian-med/debian/control
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=3681&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control (original)
+++ projects/med/trunk/debian-med/debian/control Thu Dec 20 08:31:11 2012
@@ -5,7 +5,7 @@
Maintainer: Debian Med Packaging Team
<[email protected]>
DM-Upload-Allowed: yes
Uploaders: Andreas Tille <[email protected]>
-Build-Depends-Indep: blends-dev (>= 0.6.15)
+Build-Depends-Indep: blends-dev (>= 0.6.16.2)
Standards-Version: 3.9.3
Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/
Vcs-Svn: svn://svn.debian.org/blends/projects/med/trunk/debian-med/
@@ -58,7 +58,7 @@
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: abacas, acedb-other, acedb-other-belvu, acedb-other-dotter,
adun.app, alien-hunter, altree, amap-align, ampliconnoise, autodock,
autodock-vina, autogrid, ballview, bedtools, biomaj, blast2, bowtie, bowtie2,
boxshade, bwa, cd-hit, clonalframe, clustalo, clustalw, clustalx, dialign,
dialign-tx, disulfinder, dotur, dssp, embassy-domainatrix, embassy-domalign,
embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fasttree,
fastx-toolkit, ffindex, figtree, filo, gamgi, garlic, gbrowse, gdpc, gentle,
gff2aplot, gff2ps, ghemical, glam2, grinder, gromacs, hhsuite, hmmer, infernal,
jalview, jellyfish, jmol, kalign, last-align, librg-utils-perl, loki, mafft,
maq, maqview, massxpert, melting, mipe, mira-assembler, mlv-smile, mothur,
mrbayes, mummer, muscle, mustang, ncbi-blast+, ncbi-epcr, ncbi-tools-bin,
ncbi-tools-x11, ncoils, neobio, njplot, perlprimer, phyml, picard-tools,
plasmidomics, plink, poa, populations, primer3, probalign, probcons, proda,
profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md,
profnet-norsnet, profnet-prof, profnet-snapfun, profphd, profphd-net,
profphd-utils, proftmb, pymol, pynast, python-cogent, qiime, r-bioc-cummerbund,
r-bioc-hilbertvis, r-cran-genabel, r-cran-qtl, r-other-bio3d,
r-other-mott-happy, rasmol, raster3d, raxml, readseq, reprof, rnahybrid,
samtools, sibsim4, sigma-align, sim4, squizz, sra-toolkit, ssake,
staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tm-align,
transtermhp, tree-puzzle | tree-ppuzzle, treeviewx, vcftools, velvet, wise
-Suggests: abyss, act, amos-assembler, amoscmp, anfo, apollo, arachne, arb,
artemis, asap, augustus, autodocktools, axparafit, axpcoords, bagphenotype,
bambus, bamtools, beads, beast-mcmc, big-blast, bigsdb, blimps-utils, blixem,
btk-core, cactus, caftools, cain, cap3, cdna-db, cinema, circos, clonalorigin,
clustalw-mpi, cluster3, cmap, coalesce, codonw, compclust, concavity,
conservation-code, contralign, coot, copycat, crossbow, cufflinks, cytoscape,
das-proserver, dazzle, decipher, e-hive, ecell, edtsurf, eigensoft, elph,
embassy-phylip, emboss-explorer, ensembl, est-db, estferret, estscan, exalt,
excavator, fas, fasta, fastqc, figaro, finex, fluctuate, forester, forge,
galaxy, gassst, gbioseq, gbrowse-syn, genemark, genesplicer, genetrack,
genezilla, genographer, genometools, glimmerhmm, gmap, gmv, grogui, haploview,
hawkeye, hexamer, hilbertvisgui, hmmer2, igv, jbrowse, jigsaw, jstreeview,
kempbasu, lagan, lamarc, logol-bin, logomat-m, ltrsift, lucy, mage2tab, maker2,
martj, maude, mauvealigner, maxd, melting-gui, meme, mesquite, metarep,
microbiomeutil, migrate, minimus, mirbase, mobyle, molekel, mosaik-aligner,
mozilla-biofox, mpsqed, msatfinder, mugsy, mummergpu, murasaki, mview,
ncbi-seg, ngila, norsnet, norsp, nw-align, oases, obo-edit, oligoarrayaux,
omegamap, operondb, pal2nal, paml, partigene, patman, patristic, pcma, pdb2pqr,
pfaat, pftools, phagefinder, phpphylotree, phy-spread, phylip, phylographer,
phyloviz-core, phylowin, plato, prank, predictnls, predictprotein, proalign,
profbval, profisis, profit, prot4est, pscan-tfbs, psipred, pyrophosphate-tools,
python-orange, python-rdkit, python-reaper, qtlcart, r-ape,
r-other-valdar-bagphenotype.library, raccoon, ray-denovoassembler, rbs-finder,
rdp-classifier, recombine, repeatmasker, rmblast, roche454ace2caf, rose,
rosetta, sap, seaview, seq-gen, seqan-apps, seqtk, sequenceconverter.app, sga,
sift, smalt, snap, snpeff, soapdenovo, spice, splitstree, sra-sdk, ssaha,
strap, tacg, taverna, taxinspector, tetra, tigr-assembler, tigr-glimmer-mg,
tophat, trace2dbest, tracetuner, treebuilder3d, treetime, treeview, tripal,
trnascan-se, twain, ugene, uniprime, vegan, vienna-rna, vmd, wgs-assembler,
x-tandem-pipeline, zalign, zodiac-zeden
+Suggests: abyss, act, amos-assembler, amoscmp, anfo, apollo, arachne, arb,
artemis, asap, augustus, autodocktools, axparafit, axpcoords, bagphenotype,
bambus, bamtools, beads, beast-mcmc, big-blast, bigsdb, blimps-utils, blixem,
btk-core, cactus, caftools, cain, cap3, cdbfasta, cdna-db, cinema, circos,
clonalorigin, clustalw-mpi, cluster3, cmap, coalesce, codonw, compclust,
concavity, conservation-code, contralign, coot, copycat, crossbow, cufflinks,
cytoscape, das-proserver, dazzle, decipher, e-hive, ecell, edtsurf, eigensoft,
elph, embassy-phylip, emboss-explorer, ensembl, est-db, estferret, estscan,
exalt, excavator, fas, fasta, fastqc, figaro, finex, fluctuate, forester,
forge, galaxy, gassst, gbioseq, gbrowse-syn, genemark, genesplicer, genetrack,
genezilla, genographer, genometools, glimmerhmm, gmap, gmv, grogui, haploview,
hawkeye, hexamer, hilbertvisgui, hmmer2, igv, jbrowse, jigsaw, jstreeview,
kempbasu, lagan, lamarc, logol-bin, logomat-m, ltrsift, lucy, macs, mage2tab,
maker2, martj, maude, mauvealigner, maxd, melting-gui, meme, mesquite, metarep,
microbiomeutil, migrate, minimus, mirbase, mobyle, molekel, mosaik-aligner,
mozilla-biofox, mpsqed, msatfinder, mugsy, mummergpu, murasaki, mview,
ncbi-seg, ngila, norsnet, norsp, nw-align, oases, obo-edit, oligoarrayaux,
omegamap, operondb, pal2nal, paml, partigene, patman, patristic, pcma, pdb2pqr,
pfaat, pftools, phagefinder, phpphylotree, phy-spread, phylip, phylographer,
phyloviz-core, phylowin, plato, prank, predictnls, predictprotein, proalign,
profbval, profisis, profit, prot4est, pscan-tfbs, psipred, pyrophosphate-tools,
python-orange, python-rdkit, python-reaper, qtlcart, r-ape,
r-other-valdar-bagphenotype.library, raccoon, ray-denovoassembler, rbs-finder,
rdp-classifier, recombine, repeatmasker, rmblast, roche454ace2caf, rose,
rosetta, sap, seaview, seq-gen, seqan-apps, seqtk, sequenceconverter.app, sga,
sift, smalt, snap, snpeff, soapdenovo, spice, splitstree, spread-phy, sra-sdk,
ssaha, strap, tacg, taverna, taxinspector, tetra, tigr-assembler,
tigr-glimmer-mg, tophat, trace2dbest, tracetuner, treebuilder3d, treetime,
treeview, tripal, trnascan-se, twain, ugene, uniprime, vegan, vienna-rna, vmd,
wgs-assembler, x-tandem-pipeline, zalign, zodiac-zeden
Description: Debian Med micro-biology packages
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences.
@@ -67,7 +67,7 @@
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: bioperl, bioperl-run, biosquid, libace-perl, libai-fann-perl,
libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl,
libbio-primerdesigner-perl, libbiococoa-dev, libbiojava-java, libbiojava3-java,
libchado-perl, libffindex0-dev, libgenome-1.3-0-dev, libgo-perl,
libhmsbeagle-dev, libjebl2-java, libncbi6-dev, libpal-java,
librg-blast-parser-perl, librg-reprof-bundle-perl, librostlab-blast-doc,
librostlab-blast0-dev, librostlab-doc, librostlab3-dev, libsort-key-top-perl,
libsrf-dev, libstaden-read-dev, libtfbs-perl, libvibrant6-dev, libzerg-perl,
libzerg0-dev, mcl, python-biopython, python-cogent, r-bioc-biobase,
r-cran-genetics, r-cran-haplo.stats, ruby-bio, seqan-dev
-Suggests: bioclipse, biostrings, iranges, libbamtools-dev, libbio-das-perl,
libforester-java, libgbfp-dev, libgenometools0-dev, libgff-perl, libmems-1.5-1,
libnhgri-blastall-perl, libopenmm4-dev, libqsearch-dev,
librcsb-core-wrapper0-dev, libsbml5-dev, libswarm2-dev, octace-bioinfo,
octave-bioinfo, pysam, python-biom-format, python-librcsb-core-wrapper,
python-mmtk, r-bioc-biocgenerics, r-cran-rocr
+Suggests: bioclipse, biostrings, iranges, libbamtools-dev, libbio-das-perl,
libforester-java, libgbfp-dev, libgenometools0-dev, libgff-perl, libmems-1.5-1,
libnhgri-blastall-perl, libopenmm4-dev, libqsearch-dev,
librcsb-core-wrapper0-dev, libsbml5-dev, libswarm2-dev, octace-bioinfo,
octave-bioinfo, python-biom-format, python-librcsb-core-wrapper, python-mmtk,
python-pysam, r-bioc-biocgenerics, r-cran-rocr
Description: Debian Med packages for development of micro-biology applications
This metapackage will install Debian packages which might be helpful
for development of applications for micro-biological research.
@@ -118,7 +118,7 @@
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: aeskulap, amide, ants, biosig-tools, caret, ctn, ctsim, dcmtk,
dicom3tools, dicomnifti, dicomscope, ginkgocadx, gofigure2, gwyddion, imagej,
imagevis3d, itksnap, king, libgdcm-tools, medcon, minc-tools, mriconvert,
mricron, mrtrix, nifti-bin, odin, openmeeg-tools, openslide-tools,
pixelmed-java, plastimatch, python-dipy, python-mvpa, python-nifti,
python-nipy, python-nipype, python-nitime, sigviewer, sofa-apps, tifffile,
via-bin, volview, voxbo, xmedcon
-Suggests: afni, bioimagesuite, bioimagexd, blox, brainvisa, camitk-imp,
cdmedicpacs, cellprofiler, cmtk, connectomeviewer, conquest-dicom-server, crea,
dcm4chee, devide, dicom4j, dicoogle, drjekyll, dti-query, dtitk, ecg2png,
eeglab, elastix, fiji, freesurfer, fsl, fslview, gimias, hid, imagemagick,
imview, incf-nidash-oneclick-clients, insightapplications, invesalius, isis,
jemris, jist, kradview, libdcm4che-java, libvista2, lipsia, maris, mayam,
medisnap, mesa-test-tools, micromanager, mipav, miview, mni-autoreg,
mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mrisim, omero, opendicom.net,
openelectrophy, opensourcepacs, openwalnut, orthanc, paraview, piano, pngquant,
pymeg, pysurfer, pyxid, slicer, stabilitycalc, stir, tempo, visit, vmtk, xnat
+Suggests: afni, bioimagesuite, bioimagexd, blox, brainvisa, camitk-imp,
cdmedicpacs, cellprofiler, cmtk, connectomeviewer, conquest-dicom-server, crea,
dcm4chee, devide, dicom4j, dicoogle, drjekyll, dti-query, dtitk, ecg2png,
eeglab, elastix, fiji, freesurfer, fsl, fslview, gimias, hid, imagemagick,
imview, incf-nidash-oneclick-clients, insightapplications, invesalius, isis,
jemris, jist, kradview, libdcm4che-java, lipsia, maris, mayam, medisnap,
mesa-test-tools, mia-tools, mialmpick, micromanager, mipav, miview,
mni-autoreg, mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mrisim, omero,
opendicom.net, openelectrophy, opensourcepacs, openwalnut, orthanc, paraview,
piano, pngquant, pymeg, pysurfer, pyxid, slicer, stabilitycalc, stir, tempo,
visit, vmtk, xnat
Description: Debian Med imaging packages
This metapackage will install Debian packages which might be useful in
medical image processing.
@@ -141,8 +141,8 @@
Package: med-imaging-dev
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: cimg-dev, ctn-dev, gmic, libactiviz.net-cil, libbiosig-dev,
libcv-dev, libgdcm2-dev, libgdf-dev, libgiftiio-dev, libigstk4-dev,
libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti-dev,
libopenmeeg-dev, libopenslide-dev, libvia-dev, libvolpack1-dev, libvtk5-dev,
libvxl1-dev, odin, python-cfflib, python-dicom, python-dipy, python-gdcm,
python-mvpa, python-nibabel, python-nipy, python-nipype, python-nitime,
python-pyxnat
-Suggests: emokit, igstk-examples, insighttoolkit3-examples,
libbio-formats-java, libcamitk3-dev, libctk-dev, libeegdev-dev,
libmni-perllib-perl, libnifti-doc, libopenslide-java, libteem1-dev,
libvista2-dev, libvtk5.4, libxdffileio-dev, octave-dicom, python-casmoothing,
python-libavg, python-openslide
+Recommends: cimg-dev, ctn-dev, gmic, libactiviz.net-cil, libbiosig-dev,
libcv-dev, libgdcm2-dev, libgdf-dev, libgiftiio-dev, libigstk4-dev,
libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti-dev,
libopenigtlink1-dev, libopenmeeg-dev, libopenslide-dev, libvia-dev,
libvolpack1-dev, libvtk5-dev, libvxl1-dev, odin, python-cfflib, python-dicom,
python-dipy, python-gdcm, python-mvpa, python-nibabel, python-nipy,
python-nipype, python-nitime, python-pyxnat
+Suggests: emokit, igstk-examples, insighttoolkit3-examples,
libbio-formats-java, libcamitk3-dev, libctk-dev, libeegdev-dev, libmia-2.0-dev,
libmni-perllib-perl, libnifti-doc, libopenslide-java, libteem1-dev,
libvistaio-dev, libvtk5.4, libxdffileio-dev, octave-dicom, python-casmoothing,
python-libavg, python-openslide
Description: Debian Med packages for medical image development
This metapackage will install Debian packages which might be useful
for developing applications for medical image processing.
Modified: projects/med/trunk/debian-med/debian/control.stub
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control.stub?rev=3681&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control.stub (original)
+++ projects/med/trunk/debian-med/debian/control.stub Thu Dec 20 08:31:11 2012
@@ -4,7 +4,7 @@
Maintainer: Debian Med Packaging Team
<[email protected]>
DM-Upload-Allowed: yes
Uploaders: Andreas Tille <[email protected]>
-Build-Depends-Indep: blends-dev (>= 0.6.15)
+Build-Depends-Indep: blends-dev (>= 0.6.16.2)
Standards-Version: 3.9.3
Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/
Vcs-Svn: svn://svn.debian.org/blends/projects/med/trunk/debian-med/
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