Author: tille
Date: Tue May 21 22:01:58 2013
New Revision: 3785
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3785
Log:
Rebuild using the to be uploaded blends-dev 0.6.16.4 with Felipe Sateler's
patch which looks way better than before.
Modified:
projects/med/trunk/debian-med/debian/control
Modified: projects/med/trunk/debian-med/debian/control
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=3785&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control (original)
+++ projects/med/trunk/debian-med/debian/control Tue May 21 22:01:58 2013
@@ -57,8 +57,375 @@
Package: med-bio
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: abacas, acedb-other, acedb-other-belvu, acedb-other-dotter,
adun.app, alien-hunter, altree, amap-align, ampliconnoise, aragorn, autodock,
autodock-vina, autogrid, ballview, bedtools, biomaj, blast2, bowtie, bowtie2,
boxshade, bwa, cd-hit, cdbfasta, clonalframe, clustalo, clustalw, clustalx,
concavity, conservation-code, dialign, dialign-tx, disulfinder, dotur, dssp,
edtsurf, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss,
exonerate, fastdnaml, fastlink, fasttree, fastx-toolkit, ffindex, figtree,
filo, gamgi, garlic, gbrowse, gdpc, genometools, gentle, gff2aplot, gff2ps,
ghemical, glam2, grinder, gromacs, hhsuite, hmmer, hmmer2, infernal, jalview,
jellyfish, jmol, kalign, last-align, librg-utils-perl, logol-bin, loki,
ltrsift, macs, mafft, maq, maqview, massxpert, melting, mipe, mira-assembler,
mlv-smile, mothur, mrbayes, mummer, muscle, mustang, ncbi-blast+, ncbi-epcr,
ncbi-seg, ncbi-tools-bin, ncbi-tools-x11, ncoils, neobio, njplot, norsnet,
norsp, perlprimer, phyml, picard-tools, plasmidomics, plink, poa, populations,
predictnls, predictprotein, primer3, probalign, probcons, proda, profbval,
profisis, profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md,
profnet-norsnet, profnet-prof, profnet-snapfun, profphd, profphd-net,
profphd-utils, proftmb, pymol, pynast, python-cogent, qiime, r-bioc-cummerbund,
r-bioc-hilbertvis, r-cran-genabel, r-cran-qtl, r-cran-vegan, r-other-bio3d,
r-other-mott-happy, rasmol, raster3d, raxml, ray, readseq, reprof, rnahybrid,
samtools, sibsim4, sigma-align, sim4, soapdenovo, squizz, sra-toolkit, ssake,
staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tm-align, tophat,
transtermhp, tree-puzzle | tree-ppuzzle, treeviewx, uc-echo, vcftools, velvet,
wise, zalign
-Suggests: abyss, act, amos-assembler, amoscmp, anfo, apollo, arachne, arb,
artemis, asap, augustus, autodocktools, axparafit, axpcoords, bagpipe, bambus,
bamtools, beads, beast-mcmc, big-blast, bigsdb, bitseq, blimps-utils, blixem,
btk-core, cactus, caftools, cain, cap3, cdna-db, cinema, circos, clonalorigin,
clustalw-mpi, cluster3, cmap, coalesce, codonw, compclust, contralign, coot,
copycat, crossbow, cufflinks, cytoscape, das-proserver, dazzle, decipher,
e-hive, ecell, eigensoft, elph, embassy-phylip, emboss-explorer, ensembl,
est-db, estferret, estscan, exalt, excavator, fas, fasta, fastqc, figaro,
finex, flexbar, fluctuate, forester, forge, galaxy, gassst, gbioseq,
gbrowse-syn, genemark, genesplicer, genetrack, genezilla, genographer,
glimmerhmm, gmap, gmv, grogui, haploview, hawkeye, hexamer, hilbertvisgui, igv,
jbrowse, jigsaw, jstreeview, kempbasu, lagan, lamarc, logomat-m, lucy,
mach-haplotyper, mage2tab, maker2, martj, maude, mauvealigner, maxd,
melting-gui, meme, mesquite, metarep, metastudent, microbiomeutil, migrate,
minimus, mirbase, mobyle, molekel, mosaik-aligner, mozilla-biofox, mpsqed,
msatfinder, mugsy, mummergpu, murasaki, mview, ngila, nw-align, oases,
obo-edit, oligoarrayaux, omegamap, operondb, pal2nal, paml, partigene, patman,
patristic, pcma, pdb2pqr, pfaat, pftools, phagefinder, phpphylotree, phylip,
phylographer, phyloviz-core, phylowin, plato, prank, proalign, profit,
prot4est, pscan-tfbs, psipred, pyrophosphate-tools, python-orange,
python-rdkit, python-reaper, qtlcart, r-ape, r-cran-boolnet,
r-other-valdar-bagphenotype.library, raccoon, rbs-finder, rdp-classifier,
recombine, repeatmasker, rmblast, roche454ace2caf, rose, rosetta, sap, seaview,
seq-gen, seqan-apps, seqtk, sequenceconverter.app, sga, sift, smalt, snap,
snpeff, spice, splitstree, spread-phy, ssaha, strap, strap-base, tacg, taverna,
taxinspector, tetra, tigr-assembler, tigr-glimmer-mg, trace2dbest, tracetuner,
treebuilder3d, treetime, treeview, tripal, trnascan-se, twain, ugene, uniprime,
vienna-rna, vmd, wgs-assembler, x-tandem-pipeline, zodiac-zeden
+Recommends: abacas,
+ acedb-other,
+ acedb-other-belvu,
+ acedb-other-dotter,
+ adun.app,
+ alien-hunter,
+ altree,
+ amap-align,
+ ampliconnoise,
+ aragorn,
+ autodock,
+ autodock-vina,
+ autogrid,
+ ballview,
+ bedtools,
+ biomaj,
+ blast2,
+ bowtie,
+ bowtie2,
+ boxshade,
+ bwa,
+ cd-hit,
+ cdbfasta,
+ clonalframe,
+ clustalo,
+ clustalw,
+ clustalx,
+ concavity,
+ conservation-code,
+ dialign,
+ dialign-tx,
+ disulfinder,
+ dotur,
+ dssp,
+ edtsurf,
+ embassy-domainatrix,
+ embassy-domalign,
+ embassy-domsearch,
+ emboss,
+ exonerate,
+ fastdnaml,
+ fastlink,
+ fasttree,
+ fastx-toolkit,
+ ffindex,
+ figtree,
+ filo,
+ gamgi,
+ garlic,
+ gbrowse,
+ gdpc,
+ genometools,
+ gentle,
+ gff2aplot,
+ gff2ps,
+ ghemical,
+ glam2,
+ grinder,
+ gromacs,
+ hhsuite,
+ hmmer,
+ hmmer2,
+ infernal,
+ jalview,
+ jellyfish,
+ jmol,
+ kalign,
+ last-align,
+ librg-utils-perl,
+ logol-bin,
+ loki,
+ ltrsift,
+ macs,
+ mafft,
+ maq,
+ maqview,
+ massxpert,
+ melting,
+ mipe,
+ mira-assembler,
+ mlv-smile,
+ mothur,
+ mrbayes,
+ mummer,
+ muscle,
+ mustang,
+ ncbi-blast+,
+ ncbi-epcr,
+ ncbi-seg,
+ ncbi-tools-bin,
+ ncbi-tools-x11,
+ ncoils,
+ neobio,
+ njplot,
+ norsnet,
+ norsp,
+ perlprimer,
+ phyml,
+ picard-tools,
+ plasmidomics,
+ plink,
+ poa,
+ populations,
+ predictnls,
+ predictprotein,
+ primer3,
+ probalign,
+ probcons,
+ proda,
+ profbval,
+ profisis,
+ profnet-bval,
+ profnet-chop,
+ profnet-con,
+ profnet-isis,
+ profnet-md,
+ profnet-norsnet,
+ profnet-prof,
+ profnet-snapfun,
+ profphd,
+ profphd-net,
+ profphd-utils,
+ proftmb,
+ pymol,
+ pynast,
+ python-cogent,
+ qiime,
+ r-bioc-cummerbund,
+ r-bioc-hilbertvis,
+ r-cran-genabel,
+ r-cran-qtl,
+ r-cran-vegan,
+ r-other-bio3d,
+ r-other-mott-happy,
+ rasmol,
+ raster3d,
+ raxml,
+ ray,
+ readseq,
+ reprof,
+ rnahybrid,
+ samtools,
+ sibsim4,
+ sigma-align,
+ sim4,
+ soapdenovo,
+ squizz,
+ sra-toolkit,
+ ssake,
+ staden-io-lib-utils,
+ t-coffee,
+ tabix,
+ theseus,
+ tigr-glimmer,
+ tm-align,
+ tophat,
+ transtermhp,
+ tree-puzzle | tree-ppuzzle,
+ treeviewx,
+ uc-echo,
+ vcftools,
+ velvet,
+ wise,
+ zalign
+Suggests: abyss,
+ act,
+ amos-assembler,
+ amoscmp,
+ anfo,
+ apollo,
+ arachne,
+ arb,
+ artemis,
+ asap,
+ augustus,
+ autodocktools,
+ axparafit,
+ axpcoords,
+ bagpipe,
+ bambus,
+ bamtools,
+ beads,
+ beast-mcmc,
+ big-blast,
+ bigsdb,
+ bitseq,
+ blimps-utils,
+ blixem,
+ btk-core,
+ cactus,
+ caftools,
+ cain,
+ cap3,
+ cdna-db,
+ cinema,
+ circos,
+ clonalorigin,
+ clustalw-mpi,
+ cluster3,
+ cmap,
+ coalesce,
+ codonw,
+ compclust,
+ contralign,
+ coot,
+ copycat,
+ crossbow,
+ cufflinks,
+ cytoscape,
+ das-proserver,
+ dazzle,
+ decipher,
+ e-hive,
+ ecell,
+ eigensoft,
+ elph,
+ embassy-phylip,
+ emboss-explorer,
+ ensembl,
+ est-db,
+ estferret,
+ estscan,
+ exalt,
+ excavator,
+ fas,
+ fasta,
+ fastqc,
+ figaro,
+ finex,
+ flexbar,
+ fluctuate,
+ forester,
+ forge,
+ galaxy,
+ gassst,
+ gbioseq,
+ gbrowse-syn,
+ genemark,
+ genesplicer,
+ genetrack,
+ genezilla,
+ genographer,
+ glimmerhmm,
+ gmap,
+ gmv,
+ grogui,
+ haploview,
+ hawkeye,
+ hexamer,
+ hilbertvisgui,
+ igv,
+ jbrowse,
+ jigsaw,
+ jstreeview,
+ kempbasu,
+ lagan,
+ lamarc,
+ logomat-m,
+ lucy,
+ mach-haplotyper,
+ mage2tab,
+ maker2,
+ martj,
+ maude,
+ mauvealigner,
+ maxd,
+ melting-gui,
+ meme,
+ mesquite,
+ metarep,
+ metastudent,
+ microbiomeutil,
+ migrate,
+ minimus,
+ mirbase,
+ mobyle,
+ molekel,
+ mosaik-aligner,
+ mozilla-biofox,
+ mpsqed,
+ msatfinder,
+ mugsy,
+ mummergpu,
+ murasaki,
+ mview,
+ ngila,
+ nw-align,
+ oases,
+ obo-edit,
+ oligoarrayaux,
+ omegamap,
+ operondb,
+ pal2nal,
+ paml,
+ partigene,
+ patman,
+ patristic,
+ pcma,
+ pdb2pqr,
+ pfaat,
+ pftools,
+ phagefinder,
+ phpphylotree,
+ phylip,
+ phylographer,
+ phyloviz-core,
+ phylowin,
+ plato,
+ prank,
+ proalign,
+ profit,
+ prot4est,
+ pscan-tfbs,
+ psipred,
+ pyrophosphate-tools,
+ python-orange,
+ python-rdkit,
+ python-reaper,
+ qtlcart,
+ r-ape,
+ r-cran-boolnet,
+ r-other-valdar-bagphenotype.library,
+ raccoon,
+ rbs-finder,
+ rdp-classifier,
+ recombine,
+ repeatmasker,
+ rmblast,
+ roche454ace2caf,
+ rose,
+ rosetta,
+ sap,
+ seaview,
+ seq-gen,
+ seqan-apps,
+ seqtk,
+ sequenceconverter.app,
+ sga,
+ sift,
+ smalt,
+ snap,
+ snpeff,
+ spice,
+ splitstree,
+ spread-phy,
+ ssaha,
+ strap,
+ strap-base,
+ tacg,
+ taverna,
+ taxinspector,
+ tetra,
+ tigr-assembler,
+ tigr-glimmer-mg,
+ trace2dbest,
+ tracetuner,
+ treebuilder3d,
+ treetime,
+ treeview,
+ tripal,
+ trnascan-se,
+ twain,
+ ugene,
+ uniprime,
+ vienna-rna,
+ vmd,
+ wgs-assembler,
+ x-tandem-pipeline,
+ zodiac-zeden
Description: Debian Med micro-biology packages
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences.
@@ -66,8 +433,74 @@
Package: med-bio-dev
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: bioperl, bioperl-run, biosquid, libace-perl, libai-fann-perl,
libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl,
libbio-primerdesigner-perl, libbiococoa-dev, libbiojava-java, libbiojava3-java,
libchado-perl, libffindex0-dev, libgenome-1.3-0-dev, libgenome-perl,
libgenometools0-dev, libgo-perl, libhmsbeagle-dev, libjebl2-java, libncbi6-dev,
libnhgri-blastall-perl, libpal-java, librcsb-core-wrapper0-dev,
librg-blast-parser-perl, librg-reprof-bundle-perl, librostlab-blast-doc,
librostlab-blast0-dev, librostlab-doc, librostlab3-dev, libsort-key-top-perl,
libsrf-dev, libstaden-read-dev, libtfbs-perl, libvibrant6-dev, libzerg-perl,
libzerg0-dev, mcl, pyfai, python-biom-format, python-biopython, python-cogent,
r-bioc-biobase, r-cran-genetics, r-cran-haplo.stats, ruby-bio, seqan-dev
-Suggests: bioclipse, biostrings, iranges, libbamtools-dev, libbio-das-perl,
libforester-java, libgbfp-dev, libgenome-model-tools-music-perl, libgff-perl,
libmems-1.5-1, libopenmm4-dev, libqsearch-dev, libsbml5-dev, libswarm2-dev,
octace-bioinfo, octave-bioinfo, python-librcsb-core-wrapper, python-mmtk,
python-pysam, r-bioc-biocgenerics, r-cran-rocr
+Recommends: bioperl,
+ bioperl-run,
+ biosquid,
+ libace-perl,
+ libai-fann-perl,
+ libbio-graphics-perl,
+ libbio-mage-perl,
+ libbio-mage-utils-perl,
+ libbio-primerdesigner-perl,
+ libbiococoa-dev,
+ libbiojava-java,
+ libbiojava3-java,
+ libchado-perl,
+ libffindex0-dev,
+ libgenome-1.3-0-dev,
+ libgenome-perl,
+ libgenometools0-dev,
+ libgo-perl,
+ libhmsbeagle-dev,
+ libjebl2-java,
+ libncbi6-dev,
+ libnhgri-blastall-perl,
+ libpal-java,
+ librcsb-core-wrapper0-dev,
+ librg-blast-parser-perl,
+ librg-reprof-bundle-perl,
+ librostlab-blast-doc,
+ librostlab-blast0-dev,
+ librostlab-doc,
+ librostlab3-dev,
+ libsort-key-top-perl,
+ libsrf-dev,
+ libstaden-read-dev,
+ libtfbs-perl,
+ libvibrant6-dev,
+ libzerg-perl,
+ libzerg0-dev,
+ mcl,
+ pyfai,
+ python-biom-format,
+ python-biopython,
+ python-cogent,
+ r-bioc-biobase,
+ r-cran-genetics,
+ r-cran-haplo.stats,
+ ruby-bio,
+ seqan-dev
+Suggests: bioclipse,
+ biostrings,
+ iranges,
+ libbamtools-dev,
+ libbio-das-perl,
+ libforester-java,
+ libgbfp-dev,
+ libgenome-model-tools-music-perl,
+ libgff-perl,
+ libmems-1.5-1,
+ libopenmm4-dev,
+ libqsearch-dev,
+ libsbml5-dev,
+ libswarm2-dev,
+ octace-bioinfo,
+ octave-bioinfo,
+ python-librcsb-core-wrapper,
+ python-mmtk,
+ python-pysam,
+ r-bioc-biocgenerics,
+ r-cran-rocr
Description: Debian Med packages for development of micro-biology applications
This metapackage will install Debian packages which might be helpful
for development of applications for micro-biological research.
@@ -75,8 +508,13 @@
Package: med-cloud
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: autodock, clustalw, python-cogent, raster3d
-Suggests: bagpipe, clustalw-mpi, r-other-valdar-bagphenotype.library
+Recommends: autodock,
+ clustalw,
+ python-cogent,
+ raster3d
+Suggests: bagpipe,
+ clustalw-mpi,
+ r-other-valdar-bagphenotype.library
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences, that do not
@@ -86,7 +524,9 @@
Package: med-data
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: freediams, freemedforms-freedata, python-hl7
+Recommends: freediams,
+ freemedforms-freedata,
+ python-hl7
Suggests: drugref.org
Description: Debian Med drug databases
This metapackage will install free drug databases and related
@@ -96,7 +536,8 @@
Package: med-dental
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: entangle, imagetooth
+Recommends: entangle,
+ imagetooth
Suggests: openmolar
Description: Debian Med packages related to dental practice
This metapackage contains dependencies for a collection of software
@@ -105,8 +546,18 @@
Package: med-epi
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: epigrass, r-cran-diagnosismed, r-cran-epi, r-cran-epibasix,
r-cran-epicalc, r-cran-epir, r-cran-epitools
-Suggests: netepi-analysis, netepi-collection, r-cran-msm, r-cran-surveillance,
repast
+Recommends: epigrass,
+ r-cran-diagnosismed,
+ r-cran-epi,
+ r-cran-epibasix,
+ r-cran-epicalc,
+ r-cran-epir,
+ r-cran-epitools
+Suggests: netepi-analysis,
+ netepi-collection,
+ r-cran-msm,
+ r-cran-surveillance,
+ repast
Description: Debian Med epidemiology related packages
This metapackage will install tools that are useful in epidemiological
research. Several packages making use of the GNU R data language for
@@ -117,8 +568,121 @@
Package: med-imaging
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: aeskulap, amide, ants, biosig-tools, camitk-imp, caret, ctn,
ctsim, dcmtk, dicom3tools, dicomnifti, dicomscope, ginkgocadx, gofigure2,
gwyddion, imagej, imagevis3d, invesalius, itksnap, king, libgdcm-tools, medcon,
mialmpick, minc-tools, mriconvert, mricron, mrtrix, nifti-bin, odin,
openmeeg-tools, openslide-tools, pixelmed-java, plastimatch, python-dipy,
python-mvpa, python-nifti, python-nipy, python-nipype, python-nitime,
python-surfer, sigviewer, sofa-apps, tifffile, via-bin, volview, voxbo, xmedcon
-Suggests: afni, bioimagesuite, bioimagexd, blox, brainvisa, cdmedicpacs,
cellprofiler, cmtk, connectomeviewer, conquest-dicom-server, crea, dcm4chee,
devide, dicom4j, dicoogle, drjekyll, dti-query, dtitk, ecg2png, eeglab,
elastix, fiji, freesurfer, fsl, fslview, gimias, hid, imagemagick, imview,
incf-nidash-oneclick-clients, insightapplications, isis, jemris, jist,
kradview, libdcm4che-java, lipsia, maris, mayam, medisnap, mesa-test-tools,
mia-tools, micromanager, mipav, miview, mni-autoreg, mni-colin27-nifti,
mni-icbm152-nlin-2009, mni-n3, mrisim, omero, opendicom.net, openelectrophy,
opensourcepacs, openwalnut-qt4, orthanc, paraview, piano, pngquant, pymeg,
python-pyxid, slicer, stabilitycalc, stir, tempo, visit, vmtk, xnat
+Recommends: aeskulap,
+ amide,
+ ants,
+ biosig-tools,
+ camitk-imp,
+ caret,
+ ctn,
+ ctsim,
+ dcmtk,
+ dicom3tools,
+ dicomnifti,
+ dicomscope,
+ ginkgocadx,
+ gofigure2,
+ gwyddion,
+ imagej,
+ imagevis3d,
+ invesalius,
+ itksnap,
+ king,
+ libgdcm-tools,
+ medcon,
+ mialmpick,
+ minc-tools,
+ mriconvert,
+ mricron,
+ mrtrix,
+ nifti-bin,
+ odin,
+ openmeeg-tools,
+ openslide-tools,
+ pixelmed-java,
+ plastimatch,
+ python-dipy,
+ python-mvpa,
+ python-nifti,
+ python-nipy,
+ python-nipype,
+ python-nitime,
+ python-surfer,
+ sigviewer,
+ sofa-apps,
+ tifffile,
+ via-bin,
+ volview,
+ voxbo,
+ xmedcon
+Suggests: afni,
+ bioimagesuite,
+ bioimagexd,
+ blox,
+ brainvisa,
+ cdmedicpacs,
+ cellprofiler,
+ cmtk,
+ connectomeviewer,
+ conquest-dicom-server,
+ crea,
+ dcm4chee,
+ devide,
+ dicom4j,
+ dicoogle,
+ drjekyll,
+ dti-query,
+ dtitk,
+ ecg2png,
+ eeglab,
+ elastix,
+ fiji,
+ freesurfer,
+ fsl,
+ fslview,
+ gimias,
+ hid,
+ imagemagick,
+ imview,
+ incf-nidash-oneclick-clients,
+ insightapplications,
+ isis,
+ jemris,
+ jist,
+ kradview,
+ libdcm4che-java,
+ lipsia,
+ maris,
+ mayam,
+ medisnap,
+ mesa-test-tools,
+ mia-tools,
+ micromanager,
+ mipav,
+ miview,
+ mni-autoreg,
+ mni-colin27-nifti,
+ mni-icbm152-nlin-2009,
+ mni-n3,
+ mrisim,
+ omero,
+ opendicom.net,
+ openelectrophy,
+ opensourcepacs,
+ openwalnut-qt4,
+ orthanc,
+ paraview,
+ piano,
+ pngquant,
+ pymeg,
+ python-pyxid,
+ slicer,
+ stabilitycalc,
+ stir,
+ tempo,
+ visit,
+ vmtk,
+ xnat
Description: Debian Med imaging packages
This metapackage will install Debian packages which might be useful in
medical image processing.
@@ -141,8 +705,57 @@
Package: med-imaging-dev
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: cimg-dev, ctn-dev, gmic, libactiviz.net-cil, libbiosig-dev,
libcamitk3-dev, libcv-dev, libgdcm2-dev, libgdf-dev, libgiftiio-dev,
libigstk4-dev, libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti-dev,
libopenigtlink1-dev, libopenmeeg-dev, libopenslide-dev, libvia-dev,
libvistaio-dev, libvolpack1-dev, libvtk5-dev, libvxl1-dev, odin,
python-casmoothing, python-cfflib, python-dicom, python-dipy, python-gdcm,
python-mvpa, python-nibabel, python-nipy, python-nipype, python-nitime,
python-pyxnat
-Suggests: emokit, igstk-examples, insighttoolkit3-examples,
libbio-formats-java, libctk-dev, libeegdev-dev, libmia-2.0-dev,
libmni-perllib-perl, libnifti-doc, libopenslide-java, libteem1-dev, libvtk5.4,
libxdffileio-dev, octave-dicom, python-libavg, python-openslide
+Recommends: cimg-dev,
+ ctn-dev,
+ gmic,
+ libactiviz.net-cil,
+ libbiosig-dev,
+ libcamitk3-dev,
+ libcv-dev,
+ libgdcm2-dev,
+ libgdf-dev,
+ libgiftiio-dev,
+ libigstk4-dev,
+ libinsighttoolkit3-dev,
+ libmdc2-dev,
+ libminc-dev,
+ libnifti-dev,
+ libopenigtlink1-dev,
+ libopenmeeg-dev,
+ libopenslide-dev,
+ libvia-dev,
+ libvistaio-dev,
+ libvolpack1-dev,
+ libvtk5-dev,
+ libvxl1-dev,
+ odin,
+ python-casmoothing,
+ python-cfflib,
+ python-dicom,
+ python-dipy,
+ python-gdcm,
+ python-mvpa,
+ python-nibabel,
+ python-nipy,
+ python-nipype,
+ python-nitime,
+ python-pyxnat
+Suggests: emokit,
+ igstk-examples,
+ insighttoolkit3-examples,
+ libbio-formats-java,
+ libctk-dev,
+ libeegdev-dev,
+ libmia-2.0-dev,
+ libmni-perllib-perl,
+ libnifti-doc,
+ libopenslide-java,
+ libteem1-dev,
+ libvtk5.4,
+ libxdffileio-dev,
+ octave-dicom,
+ python-libavg,
+ python-openslide
Description: Debian Med packages for medical image development
This metapackage will install Debian packages which might be useful
for developing applications for medical image processing.
@@ -151,7 +764,8 @@
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: dicompyler
-Suggests: planunc, uw-prism
+Suggests: planunc,
+ uw-prism
Description: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
oncology.
@@ -169,8 +783,14 @@
Package: med-physics
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: octave, paw, paw++, r-base
-Suggests: biosig, gate, openvibe, paw-demos
+Recommends: octave,
+ paw,
+ paw++,
+ r-base
+Suggests: biosig,
+ gate,
+ openvibe,
+ paw-demos
Description: Debian Med packages for medical physicists
This metapackage contains dependencies for a
collection of software and documentation which is useful for
@@ -180,8 +800,36 @@
Package: med-practice
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: clinica, entangle, freediams, freemedforms-emr, ginkgocadx,
gnumed-client, gnumed-server, libchipcard-tools, qrisk2, r-cran-medadherence
-Suggests: clearhealth, elementalclinic, elexis, freeb, freeicd, freemed,
freeshim, libctapimkt0, medintux, mirrormed, mirth, openemr, openpms, openrep,
proteus, remitt, resmedicinae, sqlclinic, thera-pi, tinyheb
+Recommends: clinica,
+ entangle,
+ freediams,
+ freemedforms-emr,
+ ginkgocadx,
+ gnumed-client,
+ gnumed-server,
+ libchipcard-tools,
+ qrisk2,
+ r-cran-medadherence
+Suggests: clearhealth,
+ elementalclinic,
+ elexis,
+ freeb,
+ freeicd,
+ freemed,
+ freeshim,
+ libctapimkt0,
+ medintux,
+ mirrormed,
+ mirth,
+ openemr,
+ openpms,
+ openrep,
+ proteus,
+ remitt,
+ resmedicinae,
+ sqlclinic,
+ thera-pi,
+ tinyheb
Description: Debian Med packages for practice management
This metapackage contains dependencies for a collection of software
which might be helpful for practitioners to manage their practice.
@@ -189,8 +837,20 @@
Package: med-psychology
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: praat, psignifit, psychopy, python-pyepl, python-pypsignifit,
r-cran-foreign, r-cran-psy
-Suggests: miscpsycho, psych, psychometric, psychotree, psyphy,
python-visionegg, science-psychophysics
+Recommends: praat,
+ psignifit,
+ psychopy,
+ python-pyepl,
+ python-pypsignifit,
+ r-cran-foreign,
+ r-cran-psy
+Suggests: miscpsycho,
+ psych,
+ psychometric,
+ psychotree,
+ psyphy,
+ python-visionegg,
+ science-psychophysics
Description: Debian Med packages for psychology
This metapackage contains dependencies for a collection of software
which might be helpful for psychological research.
@@ -207,8 +867,13 @@
Package: med-statistics
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: r-bioc-edger, r-bioc-limma, r-bioc-qvalue, r-cran-pvclust,
r-cran-randomforest
-Suggests: r-cran-beeswarm, science-statistics
+Recommends: r-bioc-edger,
+ r-bioc-limma,
+ r-bioc-qvalue,
+ r-cran-pvclust,
+ r-cran-randomforest
+Suggests: r-cran-beeswarm,
+ science-statistics
Description: Debian Med statistics
This metapackage will install packages which are helpful to do statistics
with a special focus on tasks in medical care.
@@ -216,8 +881,20 @@
Package: med-tools
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: edfbrowser, hunspell-de-med, hunspell-en-med, pcalendar, pondus,
python-clips, quitcount, wgerman-medical, workrave
-Suggests: cl-pubmed, cycle, entangle, mencal, mssstest
+Recommends: edfbrowser,
+ hunspell-de-med,
+ hunspell-en-med,
+ pcalendar,
+ pondus,
+ python-clips,
+ quitcount,
+ wgerman-medical,
+ workrave
+Suggests: cl-pubmed,
+ cycle,
+ entangle,
+ mencal,
+ mssstest
Description: Debian Med several tools
This metapackage will install tools for several purposes in health care.
Currently it contains some simple programs for Personal Health.
@@ -225,8 +902,14 @@
Package: med-typesetting
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: king, texlive-latex-extra, texlive-science
-Suggests: biber, bibus, jabref-plugin-oo, kbibtex, referencer
+Recommends: king,
+ texlive-latex-extra,
+ texlive-science
+Suggests: biber,
+ bibus,
+ jabref-plugin-oo,
+ kbibtex,
+ referencer
Description: Debian Med support for typesetting and publishing
This metapackage will install Debian packages that might be helpful
for typesetting and publishing in medical care and structural
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