Author: plessy
Date: Mon Sep 22 04:53:57 2014
New Revision: 4058
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=4058
Log:
Compact view (multiple packages per line). Otherwise hand-editing is just too
hard.
Modified:
projects/med/trunk/debian-med/tasks/cloud
Modified: projects/med/trunk/debian-med/tasks/cloud
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/cloud?rev=4058&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/cloud (original)
+++ projects/med/trunk/debian-med/tasks/cloud Mon Sep 22 04:53:57 2014
@@ -7,109 +7,54 @@
X-Begin-Category: Phylogenetic analysis
Depends:
- altree,
- fastdnaml,
- phyml,
- tree-puzzle | tree-ppuzzle
+ altree, fastdnaml, phyml, tree-puzzle | tree-ppuzzle
X-End-Category: Phylogenetic analysis
X-Begin-Category: Genetics
Depends:
- alien-hunter,
- fastlink,
- loki,
- plink,
- r-cran-qtl,
- r-other-mott-happy
-
-Depends: bagpipe
-
-Depends: r-other-valdar-bagphenotype.library
-
+ alien-hunter, bagpipe, fastlink, loki, plink, r-cran-qtl,
+ r-other-valdar-bagphenotype.library, r-other-mott-happy
X-End-Category: Genetics
X-Begin-Category: Sequence alignments and related programs.
-Depends:
- amap-align,
- blast2,
- boxshade,
- dialign,
- dialign-tx,
- exonerate,
- fastx-toolkit,
- gff2aplot,
- glam2,
- gmap,
- hmmer,
- kalign,
- mafft,
- mummer,
- muscle,
- poa,
- probcons,
- proda,
- python-pynast,
- sibsim4,
- sigma-align,
- sim4,
- t-coffee,
- vcftools,
- wise
-Depends: clustalw | clustalw-mpi
+Depends:
+ amap-align, blast2, boxshade, dialign, dialign-tx, exonerate,
+ fastx-toolkit, gff2aplot, glam2, gmap, hmmer, kalign, mafft, mummer,
+ muscle, poa, probcons, proda, python-pynast, sibsim4, sigma-align,
+ sim4, t-coffee, vcftools, wise
+Depends:
+ clustalw | clustalw-mpi
Comment: non-free
X-End-Category: Sequence alignments and related programs.
X-Begin-Category: EMBOSS
Depends:
- emboss,
- embassy-domalign,
- embassy-domainatrix,
- embassy-domsearch,
+ emboss, embassy-domalign, embassy-domainatrix, embassy-domsearch,
embassy-phylip
X-End-Category: EMBOSS
X-Begin-Category: High throughput sequencing
Depends:
- bedtools,
- bwa,
- filo,
- last-align,
- maq,
- picard-tools,
- r-bioc-hilbertvis,
- samtools,
- ssake,
- tophat,
- velvet
+ bedtools, bwa, filo, last-align, maq, picard-tools, r-bioc-hilbertvis,
+ samtools, ssake, tophat, velvet
X-End-Category: High throughput sequencing
X-Begin-Category: Analysis of RNA sequences.
Depends:
- infernal,
- rnahybrid
+ infernal, rnahybrid
X-End-Category: Analysis of RNA sequences.
X-Begin-Category: Molecular modelling and molecular dynamics
Depends:
- gromacs,
- mustang,
- theseus
+ gromacs, mustang, theseus
Depends: autodock, raster3d
Comment: non-free
X-End-Category: Molecular modelling and molecular dynamics
X-Begin-Category: Tools for the molecular biologist.
Depends:
- acedb-other,
- melting, mipe,
- ncbi-epcr,
- ncbi-tools-bin,
- ncoils,
- primer3,
- readseq,
- tigr-glimmer,
- seqan-apps,
- staden-io-libs-utils
+ acedb-other, melting, mipe, ncbi-epcr, ncbi-tools-bin, ncoils, primer3,
+ readseq, tigr-glimmer, seqan-apps, staden-io-libs-utils
Depends: python-cogent
Comment: non-free
X-End-Category: Tools for the molecular biologist.
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