The following commit has been merged in the master branch:
commit 7d8d997e420d95f97ecd7b9df5f2fd0efc133631
Author: Andreas Tille <[email protected]>
Date: Fri Oct 24 08:31:33 2014 +0200
Changelog auto-created using blends-dev from GSoC
diff --git a/debian/changelog b/debian/changelog
index 0927cff..7da5246 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-debian-science (1.3) UNRELEASED; urgency=medium
+debian-science (1.3) unstable; urgency=medium
[ Andreas Tille ]
* d/source/format: 3.0 (native)
@@ -6,6 +6,73 @@ debian-science (1.3) UNRELEASED; urgency=medium
[ Ole Streicher ]
* add astropy affiliated packages
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -science-neuroscience-cognitive
+ added:
+ Depends: python-nipype, python-mvpa2, python-nitime, python-dipy,
+ python-nibabel, openwalnut-qt4, python-dicom, python-nipy
+ removed:
+ Depends: python-mvpa, python-nifti
+ -science-viewing-dev
+ added:
+ Depends: python3-skimage, python-vtk6, python-plplot-qt, libvtk6-java,
+ libplplot-dev, libvtk6-dev, python3-skimage-lib
+ -science-linguistics
+ added:
+ Suggests: python-nltk, python3-nltk
+ -science-machine-learning
+ added:
+ Depends: python-mvpa2
+ removed:
+ Depends: python-mvpa
+ -science-mathematics-dev
+ added:
+ Depends: libug-dev, python-pyoperators | python3-pyoperators,
+ python-pyviennacl, python3-pyviennacl
+ -science-electronics
+ added:
+ Depends: qflow, magic, yosys, berkeley-abc, qrouter
+ -science-numericalcomputation
+ added:
+ Depends: python-lmfit | python3-lmfit
+ -science-typesetting
+ removed:
+ Depends: texmacs-extra-fonts
+ -science-engineering-dev
+ added:
+ Depends: libug-dev, r-cran-rnetcdf
+ -science-astronomy
+ added:
+ Depends: splash, sncosmo, astroml, astroquery, python3-astropy
+ -science-physics-dev
+ added:
+ Depends: python-xrayutilities
+ -science-distributedcomputing
+ added:
+ Depends: htcondor
+ removed:
+ Depends: condor
+ -science-dataacquisition-dev
+ added:
+ Depends: python-xrayutilities
+ -science-nanoscale-physics-dev
+ added:
+ Depends: crystfel-dev, libssm-dev, r-cran-rnetcdf, python-xrayutilities
+ -science-viewing
+ added:
+ Depends: trend, python-pyqtgraph
+ Suggests: r-cran-scatterplot3d
+ -science-nanoscale-physics
+ added:
+ Depends: liblapack3, libblas3, python-lmfit | python3-lmfit, crystfel
+ removed:
+ Depends: liblapack3gf, libblas3gf
+ -science-meteorology-dev
+ added:
+ Depends: r-cran-rnetcdf
+
-- Andreas Tille <[email protected]> Thu, 19 Jun 2014 21:56:24 +0200
debian-science (1.2) unstable; urgency=medium
diff --git a/dependency_data/debian-science_1.3.json
b/dependency_data/debian-science_1.3.json
new file mode 100644
index 0000000..2c06ed4
--- /dev/null
+++ b/dependency_data/debian-science_1.3.json
@@ -0,0 +1 @@
+{"neuroscience-cognitive": {"ignore": [], "suggests": ["science-typesetting",
"science-psychophysics", "fieldtrip", "eeglab", "debruijn", "freesurfer",
"xnat", "pysurfer", "connectomeviewer", "hid"], "depends": ["psignifit",
"amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin",
"python-nibabel", "python-dicom", "fsl", "fslview", "python-mvpa2",
"python-nipy", "python-nipype", "python-nitime", "python-dipy",
"openwalnut-qt4", "caret", "python-pyepl", "praat", "slicer", "dicom3tools",
"voxbo", "bioimagesuite", "afni", "mni-autoreg", "mni-n3", "brainvisa",
"lipsia", "openmeeg-tools", "mricron", "itksnap", "python-pypsignifit",
"python-statsmodels", "spm8", "iqr", "mriconvert", "python-pyxnat"],
"recommends": [], "avoid": []}, "meteorology": {"ignore": [], "suggests":
["paraview", "gnudatalanguage", "r-base", "octave-octcdf", "gerris",
"python-openturns", "python-dap"], "depends": ["cdo", "nco", "dballe",
"zygrib", "ncview", "grads", "ferret-vis", "magics++", "freefoam"
, "visit", "libgrib-api-tools", "ecaccess", "geonetwork", "ncl",
"python-netcdf", "python-grib", "python-drslib", "python-cmor",
"python-sphere", "cmip5-cmor-tables", "aweather", "libdap-bin", "libdap-doc",
"vistrails"], "recommends": [], "avoid": []}, "financial": {"ignore": [],
"suggests": [], "depends": ["r-cran-fasianoptions", "r-cran-fassets",
"r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae", "r-cran-fexoticoptions",
"r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport", "r-cran-fmultivar",
"r-cran-fnonlinear", "r-cran-foptions", "r-cran-fregression",
"r-cran-ftrading", "r-cran-funitroots", "r-cran-timedate", "r-cran-timeseries",
"r-cran-fportfolio"], "recommends": [], "avoid": []}, "robotics": {"ignore":
[], "suggests": ["arduino-mk", "ompl-demos", "libcoin60-runtime", "libvtk5.4",
"octave", "gnuplot", "octovis"], "depends": ["rtai", "xenomai-runtime",
"morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player",
"d-collide", "rtnet", "orca", "roboop", "oro
cos-rtt", "orocos-kdl", "orocos-ocl", "orocos-bfl", "ros", "openrtm",
"openhrp", "pcl", "gazebo", "openrave", "octomap-tools", "octovis"],
"recommends": [], "avoid": []}, "robotics-dev": {"ignore": [], "suggests":
["visp-images-data"], "depends": ["libcv-dev", "libroboptim-core-dev",
"libvisp-dev", "libcnoid-dev", "libode-dev", "libompl-dev", "liboctomap-dev",
"libopenigtlink-dev", "liburdfdom-dev", "liburdfdom-headers-dev",
"libslicot-dev", "libsdformat-dev", "libconsole-bridge-dev", "libcomedi-dev",
"python-comedilib", "libccd-dev"], "recommends": [], "avoid": []},
"highenergy-physics": {"ignore": [], "suggests": ["paw-demos", "geant321-doc",
"lhapdf-pdfsets-minimal", "root-system-doc"], "depends": ["cernlib",
"cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm",
"nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo",
"geant321", "feynmf", "looptools", "python-lhapdf", "octave-lhapdf",
"root-macro-fastjet", "pythia8-root-interface", "libroot-b
indings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34",
"libroot-io-xmlparser5.34", "libroot-math-mathmore5.34",
"libroot-math-unuran5.34", "libroot-misc-memstat5.34",
"libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34",
"libroot-proof-clarens5.34", "libroot-roofit5.34", "libroot-geom5.34",
"libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34",
"libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34",
"libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34",
"libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34",
"libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34",
"libroot-math-mathcore5.34", "libroot-math-matrix5.34",
"libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34",
"libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34",
"libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34",
"libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth
5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34",
"libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34",
"libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml",
"root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3",
"root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8",
"root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-proof-peac",
"root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql",
"root-plugin-geom-geombuilder", "root-plugin-geom-geompainter",
"root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel",
"root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer",
"root-plugin-hist-hbook", "root-plugin-hist-histpainter",
"root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml",
"root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd",
"root-system-rootd", "root-system-bin", "root-system-common", "root-system", "ri
vet", "rivet-plugins", "python-rivet", "rivet-root-converter", "thepeg",
"thepeg-gui", "herwig++", "geant4"], "recommends": [], "avoid": []},
"psychophysics": {"ignore": [], "suggests": ["science-neuroscience-cognitive",
"science-bci", "visionegg", "python-pyxid", "tscope", "opensesame",
"psytoolkit", "debruijn", "psychlops", "pebl"], "depends": ["psychopy",
"python-pyoptical", "python-pyepl", "libfreenect-dev", "nrec"], "recommends":
["octave-psychtoolbox-3"], "avoid": []}, "simulations": {"ignore": [],
"suggests": [], "depends": ["sumo", "esys-particle", "lammps", "liggghts",
"yade", "python-deap", "freefoam", "getdp", "fdmnes", "radiance", "music-bin"],
"recommends": [], "avoid": []}, "neuroscience-datasets": {"ignore": [],
"suggests": [], "depends": ["mni-icbm152-nlin-2009", "mni-colin27-nifti",
"haxby2001-faceobject", "fsl-harvard-oxford-atlases",
"fsl-juelich-histological-atlas", "fsl-jhu-dti-whitematter-atlas",
"fsl-mni-structural-atlas", "fsl-talairach-daemon-atlas", "fsl-ox
ford-thalamic-connectivity-atlas", "fsl-bangor-cerebellar-atlas",
"mclaren-rhesus-macaque-atlas", "sri24-atlas"], "recommends": [], "avoid": []},
"viewing-dev": {"ignore": [], "suggests": [], "depends": ["pdl",
"gnudatalanguage", "python-scientific", "libgrits-dev", "python-matplotlib",
"python-scitools", "libgnuplot-iostream-dev", "libqglviewer-dev",
"python-gnuplot", "libcoin80-dev", "libsoqt4-dev", "libvtk5-dev",
"libvtk5-qt4-dev", "tcl-vtk", "python-vtk", "libvtk-java", "vtk-examples",
"libvtk6-dev", "libvtk6-java", "python-vtk6", "python-pivy",
"libgtkdataboxmm-dev", "libgtkdatabox-0.9.2-0-dev", "libeinspline-dev",
"inventor-dev", "libqtexengine-dev", "libqwtplot3d-qt4-dev",
"python-qwt3d-qt4", "libchealpix-dev", "python3-skimage",
"python3-skimage-lib", "libplplot-dev", "python-plplot-qt"], "recommends": [],
"avoid": []}, "tools": {"ignore": [], "suggests": ["libmrmpi-dev",
"python-mrjob"], "depends": ["pegasus-wms", "openstereogram", "xoscope"],
"recommends": [], "avoid": []}
, "geography": {"ignore": [], "suggests": ["googleearth-package", "sumo",
"grace6"], "depends": ["gis-workstation", "grass", "qgis", "qgis-plugin-grass",
"proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp", "gpsd", "gpsdrive",
"gpsman", "earth3d", "openscenegraph", "thuban", "drawmap", "gpstrans",
"geoip-bin", "gpsd-clients", "grass-doc", "php5-mapscript", "phppgadmin",
"gpsmanshp", "viking", "avce00", "e00compr", "gdal-bin", "ogdi-bin", "postgis",
"postgresql-9.3-postgis-2.1", "osm2pgsql", "josm", "josm-plugins",
"merkaartor", "gosmore", "python-mapnik", "mapnik-utils", "osmpbf-bin",
"imposm", "hyantesite", "r-cran-sp", "r-cran-maptools", "r-cran-mapdata",
"r-cran-mapproj", "r-cran-maps", "pgadmin3", "openjump"], "recommends": [],
"avoid": []}, "linguistics": {"ignore": [], "suggests": ["libticcutils2-dev",
"frogdata", "libtimbl3-dev", "libtimbl4-dev", "libtimblserver2-dev",
"libmbt0-dev", "libucto1-dev", "libfolia-dev", "python-timbl", "wnsqlbuilder",
"python-nltk", "python3
-nltk"], "depends": ["wordnet", "apertium", "link-grammar", "artha",
"sequitur-g2p", "timbl", "timblserver", "mbt", "mbtserver", "ucto", "dimbl",
"frog", "collatinus", "travatar"], "recommends": [], "avoid": []},
"dataacquisition": {"ignore": [], "suggests": ["gnudatalanguage",
"comedi-source", "rtai", "xenomai-runtime", "linux-image-2.6-rt", "rt-tests",
"gpsd", "tango-db", "tango-starter", "tango-accesscontrol", "python-pytango",
"python-taurus", "hart"], "depends": ["engauge-digitizer", "qtdmm", "g3data",
"ktimetrace", "netcdf-bin", "python-sardana", "jaaa", "ghkl", "narval-utils",
"xyscan", "filo", "python-visa", "mx-dataacquisition", "epics",
"plot-digitizer", "libfreenect-dev", "opendap"], "recommends": [], "avoid":
[]}, "statistics": {"ignore": [], "suggests": ["r-cran-spc",
"science-mathematics", "libtamuanova-dev"], "depends": ["ess", "littler",
"r-recommended", "rkward", "r-cran-mapproj", "r-cran-abind", "r-cran-bayesm",
"r-cran-boot", "r-cran-cairodevice", "r-cran-car", "r
-cran-chron", "r-cran-cluster", "r-cran-coda", "r-cran-codetools",
"r-cran-date", "r-cran-dbi", "r-cran-rms", "r-cran-eco", "r-cran-effects",
"r-cran-fbasics", "r-cran-fcopulae", "r-cran-fecofin", "r-cran-fextremes",
"r-cran-fmultivar", "r-cran-foptions", "r-cran-foreign", "r-cran-fportfolio",
"r-cran-timedate", "r-cran-gdata", "r-cran-gmodels", "r-cran-gplots",
"r-cran-gregmisc", "r-cran-gtools", "r-cran-hdf5", "r-cran-hmisc",
"r-cran-its", "r-cran-kernsmooth", "r-cran-lattice", "r-cran-latticeextra",
"r-cran-lhs", "r-cran-lme4", "r-cran-lmtest", "r-cran-mapdata", "r-cran-maps",
"r-cran-matchit", "r-cran-matrix", "r-cran-mcmcpack", "r-cran-mgcv",
"r-cran-misc3d", "r-cran-mnp", "r-cran-multcomp", "r-cran-mvtnorm",
"r-cran-nlme", "r-cran-pscl", "r-cran-psy", "r-cran-qtl", "r-cran-quadprog",
"r-cran-rcmdr", "r-cran-relimp", "r-cran-rggobi", "r-cran-rgl", "r-cran-rgtk2",
"r-cran-rmpi", "r-cran-rmysql", "r-cran-rodbc", "r-cran-rpart", "r-cran-rpvm",
"r-cran-rquantlib", "r-cran-rserve",
"r-cran-rsprng", "r-cran-sandwich", "r-cran-sm", "r-cran-snow",
"r-cran-strucchange", "r-cran-survival", "r-cran-tkrplot", "r-cran-tseries",
"r-cran-vgam", "r-cran-mass", "r-cran-xml", "r-cran-zelig", "r-cran-zoo",
"r-cran-msm", "r-cran-amore", "r-cran-teachingdemos", "r-cran-expm",
"psignifit", "python-stats", "python-scipy", "r-cran-vcd", "r-cran-permute",
"python-statsmodels", "r-cran-spam", "r-cran-spatstat", "r-cran-deldir",
"r-cran-fastcluster", "r-cran-statmod", "python-openturns", "python-pandas",
"r-cran-ecodist", "r-cran-energy", "r-cran-mvnormtest", "r-cran-acepack",
"r-cran-fcalendar", "rstudio"], "recommends": [], "avoid": []},
"mathematics-dev": {"ignore": [], "suggests": ["libtet1.4.2-dev",
"libjlapack-java", "libmtj-java", "libnetlib-java", "libitpp-dev",
"libnauty-dev", "liblrs-dev", "libqrupdate-dev", "openturns-examples",
"cfortran", "givaro-dev-doc", "givaro-user-doc", "fflas-ffpack-dev-doc",
"fflas-ffpack-user-doc", "libcliquer-dev", "libntl-dev", "libdune-istl-
dev", "libdune-localfunctions-dev"], "depends": ["libmesh-dev",
"libnglib-dev", "python-numpy", "python-numexpr | python3-numexpr",
"libgsl0-dev", "liblapack-dev", "libatlas-base-dev", "libblas-dev",
"libopenblas-dev", "libsuperlu-dev", "libglpk-dev", "python-glpk",
"libglpk-java", "libcgal-dev", "libqhull-dev", "libmatheval-dev",
"python-openopt", "libmatio-dev", "libblitz0-dev", "libjama-dev", "libtnt-dev",
"liblip-dev", "libranlip-dev", "libarpack2-dev", "libarpack++2-dev",
"code-saturne-bin", "code-saturne-include", "libarmadillo-dev", "libstxxl-dev",
"libnewmat10-dev", "libmadlib-dev", "libtet1.4-dev", "dolfin-dev",
"python-dolfin", "libslepc3.4.2-dev", "petsc-dev", "libtrilinos-dev",
"python-openturns", "libopenturns-dev", "libqd-dev", "libcqrlib2-dev",
"libcvector2-dev", "libhypre-dev", "libitsol-dev", "libmuparser-dev",
"libsparskit-dev", "libspooles-dev", "libsuitesparse-dev",
"libsuitesparse-metis-dev", "libparmetis-dev", "ufc", "python-ufc",
"python-ffc", "python-ufl", "l
ibscythestat-dev", "libfreefem++-dev", "libfreefem-dev", "libgivaro-dev",
"fflas-ffpack", "liblevmar-dev", "libpolybori-dev", "libpolybori-groebner-dev",
"python-polybori", "libquadrule-dev", "libcdd-dev", "libec-dev", "libgf2x-dev",
"libiml-dev", "liblfunction-dev", "libfplll-dev", "liblinbox-dev",
"liblrcalc-dev", "libm4ri-dev", "libm4rie-dev", "libratpoints-dev",
"libsymmetrica-dev", "libtachyon-dev", "libzn-poly-dev", "libpynac-dev",
"gap-dev", "libnfft3-dev", "python-fftw3 | python3-fftw3", "libfftw3-dev",
"fftw-dev", "sfftw-dev", "liblbfgs-dev", "libdogleg-dev", "libigraph0-dev",
"libalglib-dev", "libeigen3-dev", "libviennacl-dev", "python-pyviennacl",
"python3-pyviennacl", "libgnuplot-iostream-dev", "libqcustomplot-dev",
"libquadrule-dev", "libcneartree-dev", "libmpfrc++-dev", "libscscp1-dev",
"python-linop | python3-linop", "libcminpack-dev", "minpack-dev",
"libeinspline-dev", "libdune-grid-dev", "libann-dev", "libflann-dev",
"libdouble-conversion-dev", "libfeel++-dev", "pyt
hon-ferari", "python-pynfft | python3-pynfft", "libug-dev",
"python-pyoperators | python3-pyoperators"], "recommends": [], "avoid": []},
"imageanalysis": {"ignore": [], "suggests": ["scilab-sivp", "cimg-dev",
"libsimage-dev", "libvlfeat-dev", "libvisad-java", "libvigraimpex-dev",
"python-vigra"], "depends": ["gpivtools", "gpiv", "libcv-dev", "gwyddion",
"teem-apps"], "recommends": [], "avoid": []}, "machine-learning": {"ignore":
[], "suggests": ["science-statistics", "science-numericalcomputation",
"libacovea-dev", "science-typesetting", "ask"], "depends": ["python-pyke",
"gprolog", "yap", "libtorch3-dev", "libshogun-dev", "libfann-dev",
"libsvm-dev", "libcomplearn-dev", "libqsearch-dev", "liblinear-dev",
"libocas-dev", "python-scikits-learn", "python-mdp", "python-mlpy", "weka",
"vowpal-wabbit", "r-cran-mass", "r-cran-bayesm", "r-cran-class",
"r-cran-cluster", "r-cran-msm", "r-cran-mcmcpack", "r-cran-mnp",
"r-cran-amore", "r-cran-gbm", "r-cran-tgp", "python-mvpa2", "python-statsmod
els", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev",
"libroot-math-mlp-dev", "autoclass", "mcl", "scilab-ann", "libga-dev",
"libevocosm-dev", "pgapack", "python-genetic", "octave-ga", "python-pyevolve",
"flann", "lua-torch5", "lush", "libcv-dev", "python-opencv",
"libvigraimpex-dev", "python-vigra", "pybrain", "libshark-dev", "python-pebl",
"python-orange", "python-pymc"], "recommends": [], "avoid": []}, "typesetting":
{"ignore": [], "suggests": ["tellico", "texmaker", "openoffice.org-dmaths",
"r-cran-xtable", "csv2latex", "libgtkmathview-bin", "svgtoipe",
"xul-ext-zotero", "pymarc", "luasseq", "libqtexengine-dev"], "depends":
["referencer", "kbibtex", "impose+", "pybliographer", "texlive-bibtex-extra",
"jabref", "bibutils", "biber", "feynmf", "texlive", "texlive-science",
"texlive-publishers", "texlive-math-extra", "diploma", "lyx", "texmacs",
"auctex", "xfig", "transfig", "dia", "bibus", "mlpost", "latexdiff",
"libjlatexmath-java", "cb2bib", "jeuclid-mathviewer",
"sketch", "ipe", "ipe5toxml", "quaneko", "gpapers", "zotero-standalone"],
"recommends": [], "avoid": []}, "highenergy-physics-dev": {"ignore": [],
"suggests": ["clhep-doc", "hepmc-examples", "hepmc-user-manual",
"hepmc-reference-manual", "lhapdf-ccwrap-doc", "siscone-examples",
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"libterralib-dev", "liboasis3-dev", "libudunits2-dev", "libdap-dev",
"python-openturns", "libopenturns-dev", "wcslib-dev", "wcslib-doc",
"libfreefoam-dev", "librsl-dev", "libwreport-dev"], "recommends": [], "avoid":
[]}}
\ No newline at end of file
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