Author: tille
Date: Tue Nov 4 06:24:42 2014
New Revision: 4099
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=4099
Log:
Fixed syntax of med-cloud and rerender dependencies; Versioned Build-Depends:
blends-dev (>= 0.6.92.2) to ensure no packages from non-free or unstable will
be included by accident
Modified:
projects/med/trunk/debian-med/debian/changelog
projects/med/trunk/debian-med/debian/control
projects/med/trunk/debian-med/debian/control.stub
Modified: projects/med/trunk/debian-med/debian/changelog
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=4099&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog (original)
+++ projects/med/trunk/debian-med/debian/changelog Tue Nov 4 06:24:42 2014
@@ -1,8 +1,10 @@
debian-med (2.0) UNRELEASED; urgency=medium
- *
-
- -- Andreas Tille <[email protected]> Thu, 30 Oct 2014 13:09:30 +0100
+ * Fixed syntax of med-cloud and rerender dependencies
+ * Versioned Build-Depends: blends-dev (>= 0.6.92.2) to ensure no packages
+ from non-free or unstable will be included by accident
+
+ -- Andreas Tille <[email protected]> Tue, 04 Nov 2014 07:22:11 +0100
debian-med (1.99) unstable; urgency=low
Modified: projects/med/trunk/debian-med/debian/control
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=4099&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control (original)
+++ projects/med/trunk/debian-med/debian/control Tue Nov 4 06:24:42 2014
@@ -4,7 +4,7 @@
Uploaders: Andreas Tille <[email protected]>
Section: misc
Priority: extra
-Build-Depends-Indep: blends-dev (>= 0.6.92)
+Build-Depends-Indep: blends-dev (>= 0.6.92.2)
Standards-Version: 3.9.6
Vcs-Browser:
http://anonscm.debian.org/viewvc/blends/projects/med/trunk/debian-med/
Vcs-Svn: svn://anonscm.debian.org/blends/projects/med/trunk/debian-med/
@@ -106,6 +106,7 @@
embassy-domsearch,
emboss,
exonerate,
+ fastaq,
fastdnaml,
fastlink,
fastqc,
@@ -342,7 +343,6 @@
exalt,
excavator,
fasta,
- fastaq,
figaro,
finex,
fluctuate,
@@ -582,7 +582,89 @@
Section: metapackages
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: python-cogent
+Recommends: acedb-other,
+ aevol,
+ alien-hunter,
+ altree,
+ amap-align,
+ ampliconnoise,
+ anfo,
+ aragorn,
+ arden,
+ autodock,
+ autodock-vina,
+ autogrid,
+ bamtools,
+ bedtools,
+ biomaj,
+ bioperl,
+ bioperl-run,
+ biosquid,
+ blast2,
+ bowtie,
+ bowtie2,
+ boxshade,
+ bwa,
+ cain,
+ cassiopee,
+ cd-hit,
+ cdbfasta,
+ circos,
+ clearcut,
+ clonalframe,
+ concavity,
+ datamash,
+ discosnp,
+ disulfinder,
+ dnaclust,
+ dssp,
+ fastdnaml,
+ fastlink,
+ fastqc,
+ fasttree,
+ fastx-toolkit,
+ filo,
+ fitgcp,
+ flexbar,
+ freecontact,
+ gasic,
+ genometools,
+ giira,
+ grinder,
+ idba,
+ infernal,
+ kissplice,
+ last-align,
+ loki,
+ macs,
+ mapsembler2,
+ maq,
+ melting,
+ minia,
+ mipe,
+ mira-assembler,
+ mothur,
+ ncbi-epcr,
+ ncbi-tools-bin,
+ ncoils,
+ parsinsert,
+ perm,
+ phyml,
+ phyutility,
+ picard-tools,
+ plink,
+ primer3,
+ python-cogent,
+ rnahybrid,
+ rtax,
+ samtools,
+ smalt,
+ ssake,
+ tophat,
+ velvet
+Suggests: abyss,
+ bagpipe,
+ cufflinks
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences, that do not
Modified: projects/med/trunk/debian-med/debian/control.stub
URL:
http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control.stub?rev=4099&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control.stub (original)
+++ projects/med/trunk/debian-med/debian/control.stub Tue Nov 4 06:24:42 2014
@@ -3,7 +3,7 @@
Uploaders: Andreas Tille <[email protected]>
Section: misc
Priority: extra
-Build-Depends-Indep: blends-dev (>= 0.6.92)
+Build-Depends-Indep: blends-dev (>= 0.6.92.2)
Standards-Version: 3.9.6
Vcs-Browser:
http://anonscm.debian.org/viewvc/blends/projects/med/trunk/debian-med/
Vcs-Svn: svn://anonscm.debian.org/blends/projects/med/trunk/debian-med/
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