The following commit has been merged in the master branch:
commit 1cdfcd77a2b0b00023e3b2d70f023b7cd1322f74
Author: Andreas Tille <[email protected]>
Date: Sun Feb 21 08:43:45 2016 +0100
repeatmasker is in VCS
diff --git a/tasks/bio b/tasks/bio
index e900c93..8ac6ffd 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -742,6 +742,8 @@ Depends: reapr
Depends: repeatmasker-recon
+Depends: repeatmasker
+
Depends: roadtrips
Depends: roary
@@ -2686,19 +2688,6 @@ Pkg-Description: annotate genomes and create genome
databases
especially useful for emerging model organism projects with minimal
bioinformatics expertise and computer resources
-Depends: repeatmasker
-Homepage: http://www.repeatmasker.org/
-License: Open Software License v. 2.1
-Pkg-Description: screens DNA sequences for interspersed repeats
- RepeatMasker is a program that screens DNA sequences for interspersed
- repeats and low complexity DNA sequences. The output of the program is a
detailed
- annotation of the repeats that are present in the query sequence as well as a
- modified version of the query sequence in which all the annotated repeats have
- been masked (default: replaced by Ns). On average, almost 50% of a human
genomic
- DNA sequence currently will be masked by the program. Sequence comparisons in
- RepeatMasker are performed by one of several popular search engines including,
- cross_match, ABBlast/WUBlast, RMBlast and Decypher.
-
Depends: rmblast
Homepage: http://tandem.bu.edu/trf/trf.html
License: Same as blast2
--
Debian Med metapackages
_______________________________________________
Blends-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/blends-commit
