The following commit has been merged in the master branch:
commit 8e6050193a59fc6b7ba1d2c43f72c324c5b67e37
Author: Afif Elghraoui <[email protected]>
Date: Sun Mar 20 20:43:18 2016 -0700
Replace wgs-assembler with its successor, canu
diff --git a/tasks/bio b/tasks/bio
index 77ae950..790c0dc 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -871,7 +871,7 @@ Depends: vmd
Depends: vsearch
-Depends: wgs-assembler
+Depends: canu
Remark: Genome assembly and large-scale genome alignment
(http://www.cbcb.umd.edu/software/)
Depends: zalign
@@ -2513,19 +2513,6 @@ Pkg-Description: gene expression data clustering
* numerical comparison between different clustering results of the same data
set
* runnable on command line as well as through a Java GUI
-Depends: tigr-assembler
-Homepage: http://www.jcvi.org/cms/research/software/
-License: free (OSI-certified)
-X-Category: Assembling
-Pkg-Description: whole-genome assembly
- Enabled the first published whole-genome assembly of a free-living organism
in 1995.
- Last revised in 2003.
- .
- See also
http://www.jcvi.org/cms/publications/listing/abstract/article/tigr-assembler-a-new-tool-for-assembling-large-shotgun-sequencing-projects/
-Remark: It seems that wgs-assembler is the more up to date program. Moreover
there
- seems to be no download option for TIGR Assembler at the J. Craig Venter
Institute
- (formerly TIGR) any more.
-
Depends: treetime
Homepage: http://treetime.linhi.com/
License: GPL
--
Debian Med metapackages
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