The following commit has been merged in the master branch:
commit eb72369c7079cf27b93d2bc0ca37e23bc7bf1711
Author: Afif Elghraoui <[email protected]>
Date: Mon Mar 28 00:56:48 2016 -0700
Move some aligner packages to bio internal grouping and add to bio-ngs
bio-ngs doesn't produce a metapackage, so the aligners should
stay in bio itself. I moved them to be within bio's internal
category of sequence alignment programs and also added them to
bio-ngs.
diff --git a/tasks/bio b/tasks/bio
index db3e953..dd5ed1a 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -44,6 +44,12 @@ Depends: boxshade, fastx-toolkit, gff2aplot, muscle,
sim4, sibsim4, tabix, t
Depends: maqview
+Depends: blasr
+
+Depends: daligner
+
+Depends: mhap
+
Depends: bwa
Depends: mummer
@@ -413,8 +419,6 @@ Depends: bigsdb
Depends: bitseq
-Depends: blasr
-
Depends: blat
Depends: bio-rainbow
@@ -449,8 +453,6 @@ Depends: crux-toolkit
Depends: cytoscape
-Depends: daligner
-
Depends: dawg
Depends: dazzdb
@@ -600,8 +602,6 @@ Depends: metastudent
Suggests: metastudent-data, metastudent-data-2, metastudent-data-3
-Depends: mhap
-
Depends: microbegps
Depends: miniasm
diff --git a/tasks/bio-ngs b/tasks/bio-ngs
index 6b8cf6c..191828c 100644
--- a/tasks/bio-ngs
+++ b/tasks/bio-ngs
@@ -11,6 +11,9 @@ Depends:
bedtools,
bwa,
bowtie,
+ blasr,
+ daligner,
+ mhap,
fastx-toolkit,
filo,
last-align,
@@ -23,6 +26,7 @@ Depends:
ssake,
tabix,
tophat,
+ bcftools,
vcftools,
velvet
--
Debian Med metapackages
_______________________________________________
Blends-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/blends-commit
