The following commit has been merged in the master branch:
commit 152910387ddea08f156ef6e5f463ba41655c1af9
Author: Andreas Tille <[email protected]>
Date: Sun Apr 10 09:17:08 2016 +0200
Generated changelog and JSON dependency data using blends-dev 0.7
diff --git a/debian/changelog b/debian/changelog
index 36df8e7..7dd770c 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -17,6 +17,141 @@ debian-science (1.5) UNRELEASED; urgency=medium
[ Sylvestre Ledru ]
* Remove myself from the uploaders
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -science-neuroscience-cognitive
+ added:
+ Depends: nifti2dicom, qnifti2dicom
+ -science-economics
+ added:
+ Depends: r-cran-ecdat, r-cran-rsdmx, python-quantecon, r-other-gecon,
r-other-bmr, r-cran-vars, recs, x13-arima-seats, minsky
+ Suggests: science-social
+ removed:
+ Depends: qtoctave
+ -science-robotics
+ added:
+ Depends: roslang, python-roscreate, python-rosunit, ros-mk, rosbuild,
python-rosmake, python-rosclean, gazebo5, rosbash
+ Suggests: gnuplot | gnuplot5
+ removed:
+ Depends: ros, gazebo
+ Suggests: octovis, gnuplot
+ -science-robotics-dev
+ added:
+ Depends: libgazebo5-dev, libsimbody-dev, libignition-math2-dev,
libignition-transport-dev
+ -science-simulations
+ added:
+ Depends: python3-woo | python-woo, calculix-ccx, python-sfepy, pysph,
libceres-dev
+ Suggests: ceres-solver-doc, libopensurgsim-dev
+ -science-viewing-dev
+ added:
+ Depends: python-gnuplotlib
+ -science-tools
+ added:
+ Depends: cwltool, snakemake, python-h5py | python3-h5py,
python-hdf5storage | python3-hdf5storage
+ Suggests: libmemtailor-dev
+ -science-linguistics
+ added:
+ Depends: apertium-lex-tools, cg3, libcld2-dev
+ Suggests: apertium-en-ca, apertium-dan, apertium-es-pt,
apertium-dan-nor, apertium-cat, apertium-fra, apertium-nno, apertium-fra-cat,
apertium-br-fr, apertium-eu-es, apertium-fr-ca, apertium-en-es, apertium-oc-ca,
apertium-pt-gl, apertium-swe-dan, apertium-af-nl, apertium-fr-es, apertium-apy,
apertium-nob, apertium-eo-ca, apertium-pt-ca, apertium-nno-nob, apertium-es-gl,
libcg3-dev, apertium-swe, apertium-es-ro, apertium-eo-es, apertium-oc-es,
apertium-cy-en, apertium-es-ca
+ -science-statistics
+ added:
+ Depends: apophenia-bin, r-cran-contfrac, r-cran-coin, r-cran-logspline,
r-cran-hypergeo, r-cran-conting, r-cran-bayesfactor, r-cran-rsdmx,
r-cran-modeltools, r-cran-vcdextra, r-cran-desolve, r-cran-elliptic,
r-cran-rinside, r-cran-estimability, r-cran-afex, r-cran-bms, r-cran-pbivnorm,
r-cran-lsmeans, r-cran-pbapply
+ Suggests: r-cran-fastmatch, r-cran-r.utils, r-cran-blockmodeling,
r-cran-futile.logger, r-cran-nnls, r-cran-catools, r-cran-lambda.r,
libapophenia2-dev, r-cran-futile.options, r-cran-r.oo, r-cran-igraph,
r-cran-magrittr
+ -science-imageanalysis
+ added:
+ Depends: python-imageio, limereg
+ removed:
+ Depends: libcv-dev
+ Suggests: libsimage-dev, libvigraimpex-dev, python-vigra,
libvlfeat-dev, cimg-dev, libvisad-java
+ -science-machine-learning
+ added:
+ Suggests: libdlib-dev
+ removed:
+ Depends: python-pyke
+ -science-mathematics-dev
+ added:
+ Depends: libplb-dev, libmathic-dev, libfrobby-dev, libnauty2-dev,
python-dtcwt | python3-dtcwt, python-cylp, libprimesieve5-dev, python-pyfftw |
python3-pyfftw, libsymmetrica2-dev, libmpfi-dev, libecm-dev, libqsopt-ex-dev,
libmathicgb-dev
+ Suggests: libtestu01-0-dev, jsurf-alggeo
+ removed:
+ Suggests: libnauty-dev, libntl-dev, libcliquer-dev
+ -science-highenergy-physics-dev
+ added:
+ Suggests: ckon
+ -science-mathematics
+ added:
+ Depends: mathicgb, singular, surf-alggeo, qsopt-ex, normaliz, graphviz,
frobby, geneagrapher, auto-07p, 4ti2
+ Recommends: gap-openmath, gap-grape
+ Suggests: gap-io, gmp-ecm, gap-scscp, primesieve
+ removed:
+ Suggests: cliquer
+ -science-electronics
+ added:
+ Depends: fpga-icestorm, arachne-pnr, graywolf
+ -science-numericalcomputation
+ added:
+ Depends: python3-woo | python-woo, python-sfepy, geneva, libopengm-dev,
libceres-dev, iep, qsopt-ex, easea, libclblas-dev, calculix-ccx,
libarrayfire-unified-dev, pysph, python-bitstring | python3-bitstring,
python-arrayfire | python3-arrayfire, libcompute-dev, libqsopt-ex-dev,
libclfft-dev
+ Suggests: ceres-solver-doc
+ -science-typesetting
+ added:
+ Depends: gummi
+ -science-engineering-dev
+ added:
+ Depends: libplb-dev, python-pynfft | python3-pynfft, libsis-jhdf5-java,
libceres-dev
+ Suggests: ceres-solver-doc, calculix-ccx-test, calculix-ccx-doc
+ removed:
+ Depends: python-nfft3 | python3-nfft3
+ -science-viewing
+ added:
+ Depends: python-matplotlib-venn | python3-matplotlib-venn, gnuplot |
gnuplot5
+ Suggests: r-cran-vioplot
+ removed:
+ Depends: gnuplot
+ -science-astronomy-dev
+ added:
+ Depends: astro-java, astro-development, astro-python, astro-python3,
astro-tcltk
+ removed:
+ Depends: libnova-dev, python-pyfits, libgyoto1-dev,
libstarlink-pal-dev, python-healpy, python-astropy-legacy, libcfitsio3-dev,
libastro-fits-cfitsio-perl, libwcstools-dev, liberfa-dev, tcl-fitstcl,
libcpl-dev, libivoafits-java, python-pywcs, libccfits-dev, slang-cfitsio,
libfits-java, python-cpl, libchealpix-dev, libstarlink-ast-dev,
libhealipx-cxx-dev, libworldwind-java, casacore-dev, libqfits-dev, wcslib-dev
+ -science-astronomy
+ added:
+ Depends: astro-catalogs, astro-gdl, astro-viewers, astro-education,
astro-tools, astro-python, astro-datareduction, astro-publication,
astro-python3, astro-frameworks, astro-telescopecontrol, astro-simulation
+ removed:
+ Depends: gpredict, predict, sncosmo, gliese, python-pyfits,
astronomical-almanac, boinc-app-seti, seesat5, eso-midas, audela, x11iraf,
yorick-full, boinc-app-milkyway, worldwind, python3-pyfits, celestia,
xplanet-images, lightspeed, splash, xorsa, savi, wcslib-tools, gcx, orbfit,
sextractor, ftools-fv, astroquery, linoccult, kstars, python3-astropy, xplanet,
casacore-tools, python-pywcs, iraf, fitscheck, xephem, python-cpl, spacechart,
openuniverse, fitsverify, ssystem, wxastrocapture, saods9, qfits-tools,
python-astropy, wcstools, xpa-tools, astroml, starplot, lynkeos.app, skycat,
stellarium, python-pyds9, yale, funtools, python-pyraf, esorex,
stardata-common, gyoto
+ Suggests: cpl-plugin-uves, yorick-cubeview, cpl-plugin-fors, pgplot5,
cpl-plugin-xsh, cpl-plugin-giraf, yorick-spydr, xtide, xtide-data,
cpl-plugin-hawki, python-scientific, yorick-yao, stars, sunclock,
scilab-celestlab, cpl-plugin-amber, cpl-plugin-kmos, yorick-gyoto,
cpl-plugin-vimos, cpl-plugin-sinfo, pdl, yorick-mira, scilab-scimysql,
scilab-overload, yorick-svipc, python-healpy
+ Ignore: gstar
+ -science-physics-dev
+ added:
+ Depends: libplb-dev, libasl-dev, python-pyfftw | python3-pyfftw
+ removed:
+ Depends: libismrmrd-dev
+ -science-distributedcomputing
+ added:
+ Depends: python-scoop
+ -science-nanoscale-physics-dev
+ added:
+ Depends: wannier90-1-dev, libpspio-dev, libclipper-dev,
libsis-jhdf5-java
+ Recommends: libhdf5-dev
+ Suggests: python-h5py
+ removed:
+ Depends: libfox95, libxc, fftw-dev, libnbc, libtrilinos-dev, libpspio,
sfftw-dev, wannier90-dev, libtrilinos-doc
+ -science-physics
+ added:
+ Depends: gpaw
+ -science-engineering
+ added:
+ Depends: calculix-ccx
+ -science-nanoscale-physics
+ added:
+ Depends: libxc, scilab-sivp, liblevmar-2-6, gnuplot | gnuplot5, scilab,
wannier90-2, wannier90-1
+ Recommends: ncview, nco
+ Suggests: pymca, libgraphviz-perl, hdf5-helpers, python-pygraphviz,
openmpi-doc | mpich-doc, netcdf-doc, maxima, dxsamples, axiom, hdf5-tools
+ removed:
+ Depends: wannier90, gnuplot, pymca, crystfel, espresso++, nco,
netcdf-doc, ncview
+ Recommends: axiom, maxima
+ Suggests: openmpi-doc | mpich-doc | lam-mpidoc, scilab-sivp, gmsh
+ * New metapackages:
+ -science-imageanalysis-dev
+
-- Andreas Tille <[email protected]> Sun, 29 Mar 2015 21:41:40 +0200
debian-science (1.4) unstable; urgency=medium
diff --git a/dependency_data/debian-science_1.5.json
b/dependency_data/debian-science_1.5.json
new file mode 100644
index 0000000..6999b2c
--- /dev/null
+++ b/dependency_data/debian-science_1.5.json
@@ -0,0 +1 @@
+{"neuroscience-cognitive": {"ignore": [], "suggests": ["science-typesetting",
"science-psychophysics", "fieldtrip", "eeglab", "debruijn", "freesurfer",
"xnat", "pysurfer", "connectomeviewer", "hid"], "depends": ["psignifit",
"amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin",
"python-nibabel", "python-dicom", "fsl", "fslview", "python-mvpa2",
"python-nipy", "python-nipype", "python-nitime", "python-dipy",
"openwalnut-qt4", "nifti2dicom", "qnifti2dicom", "caret", "python-pyepl",
"praat", "slicer", "dicom3tools", "voxbo", "bioimagesuite", "afni",
"mni-autoreg", "mni-n3", "brainvisa", "lipsia", "openmeeg-tools", "mricron",
"itksnap", "python-pypsignifit", "python-statsmodels", "spm8", "iqr",
"mriconvert", "python-pyxnat"], "recommends": [], "avoid": []}, "meteorology":
{"ignore": [], "suggests": ["paraview", "gnudatalanguage", "r-base",
"octave-octcdf", "gerris", "python-openturns", "python-dap"], "depends":
["cdo", "nco", "dballe", "zygrib", "ncview", "grads", "ferr
et-vis", "magics++", "freefoam", "visit", "libgrib-api-tools", "ecaccess",
"geonetwork", "ncl", "python-netcdf", "python-grib", "python-drslib",
"python-cmor", "python-sphere", "cmip5-cmor-tables", "aweather", "libdap-bin",
"libdap-doc", "vistrails"], "recommends": [], "avoid": []}, "financial":
{"ignore": [], "suggests": [], "depends": ["r-cran-fasianoptions",
"r-cran-fassets", "r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae",
"r-cran-fexoticoptions", "r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport",
"r-cran-fmultivar", "r-cran-fnonlinear", "r-cran-foptions",
"r-cran-fregression", "r-cran-ftrading", "r-cran-funitroots",
"r-cran-timedate", "r-cran-timeseries", "r-cran-fportfolio"], "recommends": [],
"avoid": []}, "robotics": {"ignore": [], "suggests": ["arduino-mk",
"ompl-demos", "libcoin60-runtime", "libvtk5.4", "octave", "gnuplot |
gnuplot5"], "depends": ["rtai", "xenomai-runtime", "morse-simulator",
"choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide",
"rtnet", "orca", "roboop", "orocos-rtt", "orocos-kdl", "orocos-ocl",
"orocos-bfl", "ros-mk", "rosbuild", "roslang", "rosbash", "python-rosclean",
"python-roscreate", "python-rosmake", "python-rosunit", "openrtm", "openhrp",
"pcl", "gazebo5", "openrave", "octomap-tools", "octovis"], "recommends": [],
"avoid": []}, "robotics-dev": {"ignore": [], "suggests": ["visp-images-data"],
"depends": ["libcv-dev", "libroboptim-core-dev", "libvisp-dev", "libcnoid-dev",
"libode-dev", "libompl-dev", "liboctomap-dev", "libopenigtlink-dev",
"liburdfdom-dev", "liburdfdom-headers-dev", "libslicot-dev", "libsdformat-dev",
"libconsole-bridge-dev", "libcomedi-dev", "python-comedilib", "libccd-dev",
"libgazebo5-dev", "libsimbody-dev", "libignition-transport-dev",
"libignition-math2-dev"], "recommends": [], "avoid": []}, "highenergy-physics":
{"ignore": [], "suggests": ["paw-demos", "geant321-doc",
"lhapdf-pdfsets-minimal", "root-system-doc"], "depends": ["cernlib",
"cernlib-base", "cernlib-core", "cernlib-
extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw",
"paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools",
"python-lhapdf", "octave-lhapdf", "root-macro-fastjet",
"pythia8-root-interface", "libroot-bindings-python5.34",
"libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34",
"libroot-io-xmlparser5.34", "libroot-math-mathmore5.34",
"libroot-math-unuran5.34", "libroot-misc-memstat5.34",
"libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34",
"libroot-proof-clarens5.34", "libroot-roofit5.34", "libroot-geom5.34",
"libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34",
"libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34",
"libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34",
"libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34",
"libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34",
"libroot-math-mathcore5.34", "libroot-math-matrix5.34",
"libroot-math-minuit5.34", "libroot-math-mlp5.34"
, "libroot-math-physics5.34", "libroot-math-quadp5.34",
"libroot-math-smatrix5.34", "libroot-math-splot5.34",
"libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34",
"libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34",
"libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34",
"libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34",
"root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt",
"root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2",
"root-plugin-montecarlo-pythia8", "root-plugin-net-globus",
"root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql",
"root-plugin-sql-odbc", "root-plugin-sql-pgsql",
"root-plugin-geom-geombuilder", "root-plugin-geom-geompainter",
"root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel",
"root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer",
"root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-
plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml",
"root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd",
"root-system-rootd", "root-system-bin", "root-system-common", "root-system",
"rivet", "rivet-plugins", "python-rivet", "rivet-root-converter", "thepeg",
"thepeg-gui", "herwig++", "geant4"], "recommends": [], "avoid": []},
"electrophysiology": {"ignore": [], "suggests":
["science-neuroscience-modeling", "science-dataacquisition", "spike",
"klustakwik", "neurodata", "qrtailab", "stimfit", "trellis-neuro", "relacs",
"chronus", "libbiosig-dev", "nspike", "rtxi", "bluespike", "meabench",
"mclust", "neo", "python-spykeutils", "python-neo", "pymeg",
"libxdffileio-dev", "librtfilter-dev", "libeegdev-dev", "libmcpanel-dev",
"eegview", "aghermann", "eeglab", "python-neuroshare", "patchclamp",
"spykeview"], "depends": ["openelectrophy", "libgdf-dev", "sigviewer",
"libdrawtk-dev"], "recommends": [], "avoid": []}, "simulations": {"ignore": [],
"suggests": ["libopensurgsim-dev", "ceres-solver-doc"], "depends": ["sumo",
"esys-particle", "lammps", "liggghts", "yade", "python-deap", "freefoam",
"getdp", "fdmnes", "radiance", "music-bin", "calculix-ccx", "python-sfepy",
"pysph", "python3-woo | python-woo", "libceres-dev"], "recommends": [],
"avoid": []}, "neuroscience-datasets": {"ignore": [], "suggests": [],
"depends": ["mni-icbm152-nlin-2009", "mni-colin27-nifti",
"haxby2001-faceobject", "fsl-harvard-oxford-atlases",
"fsl-juelich-histological-atlas", "fsl-jhu-dti-whitematter-atlas",
"fsl-mni-structural-atlas", "fsl-talairach-daemon-atlas",
"fsl-oxford-thalamic-connectivity-atlas", "fsl-bangor-cerebellar-atlas",
"mclaren-rhesus-macaque-atlas", "sri24-atlas"], "recommends": [], "avoid": []},
"viewing-dev": {"ignore": [], "suggests": [], "depends": ["pdl",
"gnudatalanguage", "python-scientific", "libgrits-dev", "python-matplotlib",
"python-scitools", "libgnuplot-iostream-dev", "libqglviewer-dev",
"python-gnuplot", "python-gnupl
otlib", "libcoin80-dev", "libsoqt4-dev", "libvtk5-dev", "libvtk5-qt4-dev",
"tcl-vtk", "python-vtk", "libvtk-java", "vtk-examples", "libvtk6-dev",
"libvtk6-java", "python-vtk6", "python-pivy", "libgtkdataboxmm-dev",
"libgtkdatabox-0.9.2-0-dev", "libeinspline-dev", "inventor-dev",
"libqtexengine-dev", "libqwtplot3d-qt4-dev", "python-qwt3d-qt4",
"libchealpix-dev", "python3-skimage", "python3-skimage-lib", "libplplot-dev",
"python-plplot-qt"], "recommends": [], "avoid": []}, "tools": {"ignore": [],
"suggests": ["libmrmpi-dev", "python-mrjob", "libmemtailor-dev"], "depends":
["pegasus-wms", "openstereogram", "xoscope", "python-h5py | python3-h5py",
"snakemake", "cwltool", "python-hdf5storage | python3-hdf5storage"],
"recommends": [], "avoid": []}, "geography": {"ignore": [], "suggests":
["googleearth-package", "sumo", "grace6"], "depends": ["gis-workstation",
"grass", "qgis", "qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt",
"gpsbabel", "gpx2shp", "gpsd", "gpsdrive", "gpsman", "ea
rth3d", "openscenegraph", "thuban", "drawmap", "gpstrans", "geoip-bin",
"gpsd-clients", "grass-doc", "php5-mapscript", "phppgadmin", "gpsmanshp",
"viking", "avce00", "e00compr", "gdal-bin", "ogdi-bin", "postgis", "osm2pgsql",
"josm", "josm-plugins", "merkaartor", "gosmore", "python-mapnik",
"mapnik-utils", "osmpbf-bin", "imposm", "hyantesite", "r-cran-sp",
"r-cran-maptools", "r-cran-mapdata", "r-cran-mapproj", "r-cran-maps",
"pgadmin3", "openjump"], "recommends": [], "avoid": []}, "linguistics":
{"ignore": [], "suggests": ["libticcutils2-dev", "frogdata", "libtimbl3-dev",
"libtimbl4-dev", "libtimblserver2-dev", "libmbt0-dev", "libucto1-dev",
"libfolia-dev", "python-timbl", "wnsqlbuilder", "python-nltk", "python3-nltk",
"apertium-af-nl", "apertium-apy", "apertium-br-fr", "apertium-cat",
"apertium-cy-en", "apertium-dan", "apertium-dan-nor", "apertium-en-ca",
"apertium-en-es", "apertium-eo-ca", "apertium-eo-es", "apertium-es-ca",
"apertium-es-gl", "apertium-es-pt", "apertium-es-ro", "a
pertium-eu-es", "apertium-fra", "apertium-fra-cat", "apertium-fr-ca",
"apertium-fr-es", "apertium-nno", "apertium-nno-nob", "apertium-nob",
"apertium-oc-ca", "apertium-oc-es", "apertium-pt-ca", "apertium-pt-gl",
"apertium-swe", "apertium-swe-dan", "libcg3-dev"], "depends": ["wordnet",
"apertium", "apertium-lex-tools", "link-grammar", "artha", "sequitur-g2p",
"timbl", "timblserver", "mbt", "mbtserver", "ucto", "dimbl", "frog",
"collatinus", "travatar", "cg3", "libcld2-dev"], "recommends": [], "avoid":
[]}, "dataacquisition": {"ignore": [], "suggests": ["gnudatalanguage",
"comedi-source", "rtai", "xenomai-runtime", "linux-image-2.6-rt", "rt-tests",
"gpsd", "tango-db", "tango-starter", "tango-accesscontrol", "python-pytango",
"python-taurus", "hart"], "depends": ["engauge-digitizer", "qtdmm", "g3data",
"ktimetrace", "netcdf-bin", "python-sardana", "jaaa", "ghkl", "narval-utils",
"xyscan", "filo", "python-visa", "mx-dataacquisition", "epics",
"plot-digitizer", "libfreenect-dev", "openda
p"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests":
["r-cran-spc", "science-mathematics", "libtamuanova-dev",
"r-cran-blockmodeling", "r-cran-catools", "r-cran-fastmatch",
"r-cran-futile.logger", "r-cran-futile.options", "r-cran-igraph",
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"liboce-ocaf-dev", "libpspio-dev", "spglib", "root-system", "libroot-tmva-dev",
"libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "python-fabio",
"libcbf-dev", "pyfai", "python-xrayutilities", "crystfel-dev", "libssm-dev",
"libclipper-dev"], "recommends": ["libhdf5-dev", "gsl-doc-pdf",
"libblacs-mpi-dev", "libscalapack-mpi-dev", "scalapack-doc",
"science-mathematics-dev"], "avoid": []}, "geometry": {"ignore": [],
"suggests": ["libcgal-dev", "libgeometry-primitive-perl",
"libmath-geometry-voronoi-perl", "octave-geometry"], "depends": ["carmetal",
"salome-geom", "drgeo", "geogebra-kde"], "recommends": [], "avoid": []},
"economics": {"ignore": [], "suggests": ["ess", "dynare-matlab",
"matlab-support", "science-typesetting", "science-viewing",
"science-mathematics", "science-numericalcomputation", "science-statistics",
"science-social"], "depends": ["dynare", "gretl", "octave",
"octave-econometrics", "octave-statistics"
, "octave-gsl", "octave-optim", "octave-linear-algebra", "octave-io",
"octave-symbolic", "octave-dataframe", "r-base", "r-cran-urca",
"r-cran-bayesm", "r-cran-coda", "r-cran-boot", "r-cran-foreign",
"r-cran-kernsmooth", "r-cran-matrix", "r-cran-nlme", "r-cran-hmisc",
"r-cran-tseries", "r-cran-mfilter", "r-cran-lme4", "r-cran-mcmcpack",
"r-cran-quadprog", "r-cran-fbonds", "r-cran-fimport", "r-cran-fnonlinear",
"r-cran-funitroots", "r-cran-wdi", "r-cran-pwt", "r-cran-pwt8", "r-cran-rsdmx",
"rkward", "julia", "maxima", "wxmaxima", "ipython", "python-matplotlib",
"python-numpy", "python-scipy", "python-scitools", "python-statsmodels",
"python-pandas", "python-simpy", "dolo", "python-econpy", "recs",
"python-quantecon", "r-cran-ecdat", "x13-arima-seats", "r-other-bmr", "minsky",
"r-cran-vars", "r-other-gecon"], "recommends": [], "avoid": []}, "viewing":
{"ignore": [], "suggests": ["libgrits-dev", "worldwind", "med-imaging",
"libgtkmathview-bin", "jeuclid-mathviewer", "texlive-pictures",
"pgplot5", "r-cran-plotrix", "r-cran-colorspace", "r-cran-labeling",
"r-cran-scales", "r-cran-ggplot2", "r-cran-scatterplot3d", "r-cran-vioplot",
"r-cran-aplpack", "findimagedupes", "libpuzzle-bin", "python-matplotlib",
"python-scitools", "circos", "circos-tools", "libqglviewer-dev",
"libcoin80-dev", "libsoqt4-dev", "libvtk5-dev", "libvtk5-qt4-dev", "tcl-vtk",
"python-vtk", "libvtk-java", "vtk-examples", "python-pivy"], "depends":
["vistrails", "pdl", "gnudatalanguage", "kst", "ifrit", "yorick",
"python-scientific", "fityk", "gnuplot | gnuplot5", "grace", "gri", "labplot",
"graphviz", "pyxplot", "plotdrop", "qtiplot", "python-guiqwt", "imview",
"mayavi2", "g3data", "gwyddion", "paraview", "visit", "gle-graphics", "gmsh",
"lybniz", "3depict", "mathgl", "udav", "python-viper", "matlab2tikz",
"cassandra", "pgfplots", "feedgnuplot", "libgnuplot-iostream-dev",
"libqglviewer2", "python-gnuplot", "ovito", "scidavis", "veusz", "ctioga2",
"python-seaborn", "trend", "python-pyqtgraph", "pytho
n-matplotlib-venn | python3-matplotlib-venn"], "recommends": [], "avoid": []},
"devices": {"ignore": [], "suggests": ["libticables-dev", "libticalcs-dev",
"libticonv-dev", "libtifiles-dev"], "depends": ["expeyes", "gfm", "tiemu",
"tilem", "tilp2", "bossa", "bossa-cli"], "recommends": [], "avoid": []},
"nanoscale-physics": {"ignore": [], "suggests": ["hdf5-helpers", "hdf5-tools",
"netcdf-doc", "openmpi-doc | mpich-doc", "axiom", "maxima", "libgraphviz-perl",
"python-pygraphviz", "dx", "dxsamples", "dx-doc", "gpiv", "gpivtools",
"feel++-apps", "pymca", "qtiplot", "scidavis", "science-statistics",
"science-mathematics"], "depends": ["abinit", "mpqc", "openmx", "psi3",
"quantum-espresso", "drawxtl", "etsf-io", "libxc", "feynmf", "fityk", "gnuplot
| gnuplot5", "grace", "horae", "ifeffit", "sixpack", "libblas3", "liblapack3",
"libfftw3-3", "libgsl0ldbl", "gsl-bin", "netcdf-bin", "openmpi-bin | mpich",
"science-numericalcomputation", "avogadro", "garlic", "gdis", "ghemical",
"v-sim", "gwyd
dion", "qtoctave", "scilab", "scilab-sivp", "cbflib-bin", "python-lmfit |
python3-lmfit", "ape", "atompaw", "bigdft", "cp2k", "exciting", "gpaw",
"octopus", "python-ase", "wannier90-1", "wannier90-2", "octaviz", "fdmnes",
"liblevmar-2-6"], "recommends": ["nco", "ncview", "cadabra", "extrema",
"ggobi", "mayavi2", "udav", "gperiodic", "python-elemental", "graphviz",
"libblacs-mpi1", "libscalapack-mpi1", "python-scientific", "python-scipy",
"python-scitools", "python-sympy", "pyxplot"], "avoid": []},
"imageanalysis-dev": {"ignore": [], "suggests": ["libfreeimage-dev"],
"depends": ["libcv-dev", "cimg-dev", "libsimage-dev", "libvlfeat-dev",
"libvisad-java", "libvigraimpex-dev", "python-vigra", "python-imageio",
"liblimereg-dev"], "recommends": [], "avoid": []}, "logic": {"ignore": [],
"suggests": [], "depends": ["agda", "coq", "hol-light", "hol88", "matita",
"proofgeneral", "depqbf", "picosat", "sat4j", "alt-ergo", "boolector", "cvc3",
"prover9", "mace2", "maude", "spass", "coinor-cbc",
"minisat+", "clasp", "coala", "gringo", "lbt", "maria", "mona"], "recommends":
["otter"], "avoid": []}, "psychophysics": {"ignore": [], "suggests":
["science-neuroscience-cognitive", "science-bci", "visionegg", "python-pyxid",
"tscope", "opensesame", "psytoolkit", "debruijn", "psychlops", "pebl"],
"depends": ["psychopy", "python-pyoptical", "python-pyepl", "libfreenect-dev",
"nrec"], "recommends": ["octave-psychtoolbox-3"], "avoid": []},
"distributedcomputing": {"ignore": [], "suggests": ["hpcc",
"coop-computing-tools", "python-mpi4py", "psom", "octave-mpi"], "depends":
["ipython", "torque-common", "torque-server", "nordugrid-arc-nox",
"gridengine-client", "gridengine-exec", "gridengine-master", "gridengine-qmon",
"globus-core", "openmpi-bin", "mpich", "openmpipython", "mpich2python",
"python-mpi", "htcondor", "dmtcp", "environment-modules", "python-scoop"],
"recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests":
["paw-demos", "science-statistics", "science-mathematics
", "scilab-sivp", "openctm-tools", "feel++-apps"], "depends": ["cernlib",
"geant321", "paw++", "paw", "gpaw", "clhep", "geant4", "abinit | mpqc | openmx
| psi3", "gerris", "feynmf", "freefoam", "fityk", "horae", "ifeffit",
"sixpack", "tessa | tessa-mpi", "science-numericalcomputation", "oce-draw",
"science-electronics", "v-sim", "gpiv", "gpivtools", "maxima", "python-sympy",
"axiom", "meshlab", "cadabra", "drawxtl", "opticalraytracer", "ghkl",
"python-deap", "etsf-io", "pymca", "quantum-espresso", "gwyddion", "blzpack",
"gate", "openfoam", "jfreemesh", "spis", "espresso++", "cp2k", "octaviz",
"root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev",
"libroot-math-mlp-dev", "fdmnes"], "recommends": [], "avoid": []},
"meteorology-dev": {"ignore": [], "suggests": ["gfortran", "ksh", "pkg-config",
"openturns-examples", "libfeel++-dev"], "depends": ["libemos-dev",
"libgadap-dev", "libcmor-dev", "libgrib-api-dev", "libgrib-api-tools",
"libgrib2c-dev", "libhe5-hdfeos-dev", "libhdfeo
s-dev", "libproj-dev", "libgctp-dev", "libnetcdf-dev", "netcdf-bin",
"r-cran-rnetcdf", "liblapack-dev", "libblas-dev", "libfftw3-dev", "fftw-dev",
"sfftw-dev", "libblas-doc", "liblapack-doc", "libfftw3-doc", "liblas-dev",
"libsphere-dev", "libterralib-dev", "liboasis3-dev", "libudunits2-dev",
"libdap-dev", "python-openturns", "libopenturns-dev", "wcslib-dev",
"wcslib-doc", "libfreefoam-dev", "librsl-dev", "libwreport-dev"], "recommends":
[], "avoid": []}, "social": {"ignore": [], "suggests": [], "depends":
["opensesame"], "recommends": [], "avoid": []}}
\ No newline at end of file
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